Pseudomyrmex gracilis (graceful twig ant): 109862868
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Entry
109862868 CDS
T05003
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109862868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgc03041
]
109862868
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109862868
Spliceosome [BR:
pgc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109862868
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
SLFN-g3_helicase
nSTAND_NTPase5
Flavi_DEAD
nSTAND3
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109862868
NCBI-ProteinID:
XP_020298621
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MSKYRREETSSEDSNSEEERRKKDIKERDSFASRLRAKDESKVRKVAMPAGSGAAEAAKR
LKIMETDAREKLVPKLRVESRRKYLEKRKEDKVMELEADILDDEFLFDEEILTEKEKRER
MHKKQLLHLAKEHEKARELERIQRYHMPLEKGKVESEIDITDKEPPQSEQSKWESEQMSS
AVFRFGAKDRKAQQEYDLLMGDEIEFVQALRMPGHDKDKKREESPPAHVKTLQTIQETKK
SLPIYPFRNDLIQAIKGHQILIIEGETGSGKTTQIPQYLYEAGFTKDGKIIGCTEPRRVA
AMSVAARVAHEMAVKLGNEVGYAIRFEDCTSHRTRIKYMTDGTLHREFLSEPDLASYSVM
IIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATLDATKFSEFFDDAPIFRIPGRRF
PVDIYYTKAPEADYIDACVVSILQIHATQPPGDILVFLTGQEEIETCQEMLQERVRRLGS
DLKELLILPVYANLPSDMQAKIFQPTPSGARKVILATNIAETSLTIDNIIYVIDPGFAKQ
NNFNSRTGMESLMVVPISKASANQRAGRAGRIAPGKCFRLYTAWAYQHELEDNTVPEIQR
INLGNAVLTLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHCGELTKLGRRMAE
FPLDPMMAKMLLASERYRCSEEVATIAAMLSVNGAIFYRPKDKIVYADAARKKFHVPSGD
HLTLLNVYNEWEKYEFNTQWCYENFIQHKSMKRARDVREQLVGLMQRVEMELVSVKSTET
VNIRKAITAGYFYHVARLSKGGHYKTAKHNQQVAIHPNSSLFEELPRWVLYHELVFTTKE
FMRQVTEIESKWLLEVAPHYYKPKELEDSSNKKMPKIAGRSRPDGTN
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatataggcgtgaagaaacctcaagtgaggacagtaacagtgaagaggaacgt
cgcaaaaaagatattaaagagagagatagttttgctagtcgtctcagagctaaagatgaa
agcaaggtacgcaaagttgcaatgcctgcaggctctggagctgctgaagcagcaaagaga
ctcaagattatggaaacagatgctagggaaaaattggtacctaaacttcgtgttgaatct
cgtcgcaaatatcttgagaaaagaaaagaagataaagtgatggaattagaagcagacata
ttagatgacgaatttttatttgacgaagaaattttaacagaaaaagaaaaacgagaaaga
atgcacaaaaaacagttattacatttagcaaaagaacacgaaaaagcaagagaacttgaa
cgcattcaacggtatcatatgcctcttgagaaaggcaaagtagaatcagaaattgatatt
acagataaagaaccaccacaatctgaacaaagcaagtgggaatcagaacagatgtcatca
gctgtatttcgatttggcgctaaagatagaaaagctcaacaagaatatgatctacttatg
ggagatgaaatagaatttgttcaagctttacgtatgcctggacatgataaagataaaaaa
cgtgaagaaagtccacctgctcatgttaaaaccttgcaaacaatacaggagacaaaaaag
agcttgccaatatatccctttagaaacgatcttatccaagctataaaaggtcatcagatt
ttgattattgaaggtgagacaggatcaggaaaaacaacacaaataccccaatacttatat
gaagctggatttacaaaagacggcaaaattatcggttgcacggaaccgcgaagagtagcg
gcgatgtcagtggctgcgagagtagctcacgaaatggctgtaaaactaggtaacgaagtt
ggctatgctattcgttttgaagactgcacatcgcatcgtacccgtatcaagtatatgacc
gacggtaccttgcaccgagagtttttaagcgaacctgatttggcatcatacagcgtgatg
ataatcgatgaagcacacgagcggactttacacaccgatatattattcggactggtgaaa
gatattgcgagatttcgtcctgacttgaaattgctgatatcatcagctacactagatgca
acaaaattcagtgaattctttgatgacgcgccaatctttagaatacctggtcgtcgtttt
ccagttgatatttattacaccaaagctccggaagcagattacattgatgcgtgcgtagtt
tctattctccaaattcatgccacgcagccaccaggcgatatattggtatttttgactgga
caagaagagatcgagacgtgccaggaaatgctacaggaaagagtcagaagactgggaagc
gatttaaaagaacttttaattttaccagtgtacgcgaatttacctagcgatatgcaagca
aagatattccaaccaactccatctggagcaagaaaagttatacttgcaaccaatatagct
gaaacatccttgaccatagataacataatctacgtgatagatcctggctttgcaaagcag
aataattttaattcacgcaccggcatggaaagtttgatggttgtaccgatcagtaaagct
tccgcgaatcaaagagcgggacgtgcgggaagaatagcacctggaaagtgttttcgtttg
tatacagcttgggcttatcagcatgaacttgaagataatactgtcccggaaatacaaaga
attaatcttggtaatgcagtgctgactttgaaagctcttggcattaacgatttggtacat
tttgattttttggatcctccgccacatgaaacgttagttctagcactggaacaactctat
gcgttaggtgcattgaatcattgcggagagctgaccaagctcggtcgtagaatggccgag
tttccgttggatccaatgatggcaaagatgctgttggccagcgaaagatatcgctgttca
gaagaagtagcaaccatcgctgccatgctatcagttaatggagcaatcttttatcgacca
aaggataaaattgtatacgctgatgctgcgcgtaaaaaatttcatgttccgagtggcgat
catctaactcttttgaacgtgtacaatgaatgggagaaatatgagtttaatacacagtgg
tgttacgaaaactttatacaacacaaatccatgaagcgtgcaagagatgtgagagaacaa
ctggtaggtttaatgcaacgtgtagaaatggaattggtttctgtcaaaagcacagagaca
gtgaatattagaaaggctattacagctggttatttttaccacgtagcacgtttgtccaag
ggaggtcactataaaaccgcgaagcataatcaacaagttgcaatacatccaaatagttct
ctgtttgaggagcttccgcgatgggttctttatcacgagcttgtctttactactaaagaa
tttatgcgtcaagtaacagaaatagaaagtaaatggctgctagaagtggcacctcattat
tataagccaaaagaacttgaagactcttcaaacaaaaagatgccgaaaatcgccggcaga
tcacgaccggacggtaccaactaa
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