Pseudomyrmex gracilis (graceful twig ant): 109864116
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Entry
109864116 CDS
T05003
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03022
Basal transcription factors
pgc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109864116
09124 Replication and repair
03420 Nucleotide excision repair
109864116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgc03021
]
109864116
03400 DNA repair and recombination proteins [BR:
pgc03400
]
109864116
Transcription machinery [BR:
pgc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109864116
DNA repair and recombination proteins [BR:
pgc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109864116
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
DUF7630
Motif
Other DBs
NCBI-GeneID:
109864116
NCBI-ProteinID:
XP_020300619
LinkDB
All DBs
Position
Unknown
AA seq
401 aa
AA seq
DB search
MAEEETEEKEYRWETGYEKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQGARLGMM
RHLYIILDASESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKIS
DLAGNSKKHIKELRALQLTAMTGEPSLQNSLELATKSLKLLPSHASKEILVIIGALTTCD
PGDINETIQNLKLDSIRCSVIGLAAELFICKRMASVTGGEHGVALDDKHYKEQLNAHIDP
PPAATRLDAALVKMGFPHHALQSNVSDTSITVCMCHAENSDDSVKLTSTGYLCPQCLSKH
CELPVECRACGLTLVSAPHLARSYHYLFPVEPFKEVAFEDNHTFCFGCQKGFTQKDKKVY
ICEKCNQTFCLDCEIFIHEILHTCPGCATNPETYRNSADQS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaagaaactgaagaaaaggagtatcgttgggaaactggttacgaaaaaaca
tgggaagcgatcaaagaggatgatcatggattattagaagcatctgtcgcagatataata
cacaatgctaagagaaaacgtcagttagaacggaaacaaggtgccagattgggaatgatg
agacatctttatatcatcttggatgcttctgaatcaatgtcacttcaagatttgaaacca
actcgtttcctatgttctctaaagcttctagaagactttatcgaagaatttttctatcaa
aatcctataagtcaattaggagtgattataacaagaaataaaagagctgagaaaattagt
gatttggctggtaactcgaaaaaacatatcaaggaattacgagccttacaattgactgca
atgactggcgaaccctcgttgcaaaattctttggaattggccacaaagtcgctgaagtta
ttaccttctcacgccagtaaggaaatcttggtaatcataggtgctcttaccacatgtgac
ccaggagacatcaacgaaacaatacaaaatctaaaactggacagtatcagatgtagcgta
ataggactagcggctgaattgtttatctgcaaacgaatggcgagtgtcaccggtggcgaa
cacggtgttgcgcttgacgacaagcattacaaggagcagttaaatgcgcacatagatcct
ccacctgcggcgacgcgtttagatgctgcacttgttaaaatgggctttcctcatcatgct
ttgcagtccaacgtatcggacacttctataaccgtgtgcatgtgccacgcagagaattcc
gacgactcggtaaaacttacgagtacaggttacctctgtcctcagtgtctcagcaaacat
tgcgaacttcccgtggagtgtagagcttgcggtcttactttggtgtcagctcctcatttg
gcgcgatcgtatcattatctgtttcccgttgagccttttaaggaagttgcgtttgaggac
aatcacactttctgtttcggttgccaaaaaggatttactcaaaaggacaaaaaggtttat
atatgtgaaaaatgtaatcaaacattttgcctggattgcgagatatttattcatgaaatt
ttgcacacgtgtcccggttgtgcaacaaatcctgaaacttacagaaactctgccgatcaa
tcttaa
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