Phaeobacter gallaeciensis DSM 26640: Gal_00058
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Entry
Gal_00058 CDS
T02968
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gal_00058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgd03019
]
Gal_00058
03400 DNA repair and recombination proteins [BR:
pgd03400
]
Gal_00058
Enzymes [BR:
pgd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gal_00058
Messenger RNA biogenesis [BR:
pgd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gal_00058
DNA repair and recombination proteins [BR:
pgd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gal_00058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
ResIII
Myo1_CA
Motif
Other DBs
NCBI-ProteinID:
AHD07861
LinkDB
All DBs
Position
61730..63829
Genome browser
AA seq
699 aa
AA seq
DB search
MSAVSPEMTALSGATSPAVSATDATPLLREIFGFDGFRPGQEEIVDAVTAGENVLAIMPT
GGGKSLCFQLPALLREGVTVVISPLIALMRDQVRALQEVGVTAGALTSGNTEEETEAVWR
SIEEGRLKLLYMAPERLASGAAMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELR
RVLDVPLAAFTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDSPRRQILE
FAAARKGQSGIVYCGTRAKTEALAAGLREAGHAACYYHGGMDAEDRRGVETRFAREDGLI
VVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRGGRDGAPAETLTLFGPEDIRLRR
SQIDEGLAPAERRSADHARLNALLGLAEALKCRRQTLLAYFGEAAEPCGNCDLCDQPVDV
FDGTTAVRKALSAILRTNETYGSGHLIDILVGNITDRVRDKRHDDLSVFACGKEYGKRQW
QAVFRQMMGHDLVRPDPERHGALRMTEAALPVLRGEQEIALRRDTISSAKRSPAVKALVS
DEDAPLLSALKAKRRALAEAQKVPAYVIFPDRTLIEMAETRPDTLDKMARIGGVGAKKLE
RYGNEFLAVITGESEALHPMRRKLAGRDAGSLYDALMETQTRLARGNDGTDKPLSCSAAQ
LAKLAQMRPQDEMVITRLLGERRAERFAAAFLDVLRGAG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagtttcgccggaaatgaccgccctcagtggtgcgacgtcacctgccgtgtca
gcaaccgatgcgacaccgctgttgcgcgagatcttcggctttgacgggtttcggcccggt
caggaagagatcgttgatgcggtgacggctggcgaaaacgtcttggcgatcatgccgacg
ggtggcggaaaatccctgtgtttccaattgcccgcactgctgcgcgagggggttacggtg
gtgatttcgccattgattgcgctgatgcgggatcaggtgcgggcactgcaggaggtcggc
gtgaccgccggggcgctcacctctggcaatacggaggaggagaccgaagcggtctggcgg
tccattgaggaggggcggctgaagcttctctatatggcgccggaacggttggcctctggg
gcggcgatgggcatgttgcgccgcatcggtgtcagcctgatcgcggtggatgaggcgcat
tgcgtcagccagtgggggcatgatttccgcccggattacctgcgcatcggggaattgcgc
cgggtgctggacgtgcctttggcagccttcaccgcgacggcagatcaggaaacccgcgaa
gagattgttgagaagctgtttgatggcgaggcgccgcgcagttttctgcggggctttgat
cggcccaatatccatcttgcctttgccaccaaagacagtccgcgccgacagattttggaa
tttgcggccgcgcgaaaaggccagtccggaattgtctattgcggcacccgcgccaagacc
gaagcactggcggcggggctgcgagaggcggggcacgcggcctgttattatcatgggggt
atggacgcggaggatcgacgcggcgtggagacccgctttgcccgcgaggatgggttgatt
gtggtggcgaccgttgcctttggcatggggatcgacaagccagacattcgctgggttgct
catgcggatctgcccaaatctatcgaggcctattatcaggaaatcggccgtggtggccgg
gatggcgcgcctgctgagacgctgaccctgttcgggccggaggatattcgcctgcgccgc
agccagattgacgaagggctggcgcctgcggagcggcgcagcgccgaccacgcgcggctg
aatgcgctgctggggctggcggaggcgctgaaatgtcggcggcaaaccctgctggcctat
ttcggcgaggcggctgagccttgtggcaactgtgatctgtgtgaccagccggtggatgtg
tttgatggcaccacggcggtacgcaaggcactgtcggcgatcctgcggaccaatgagacc
tatggatcagggcatctgatcgacattctggtgggcaatatcaccgaccgggtgcgcgac
aagcggcatgatgacctgtcggttttcgcctgtggcaaggaatatggcaagcggcagtgg
caggcggtgttccggcagatgatggggcatgatctggtgcgcccggatcccgaacgtcac
ggtgccttgcggatgaccgaagcggcgctgccggtgctgcgcggcgagcaggagattgcg
ctgcgccgcgataccatcagttcggccaagcgcagccctgcggtgaaggcgctggtgtcg
gatgaggatgcgccgctgctgtcggcgctgaaggccaagcgtcgcgcgctggcggaggcg
caaaaagtgccggcctatgtcattttcccggatcgcaccctgatcgagatggccgaaacg
cgcccagatacgctggacaagatggcgcggatcggcggtgtcggcgccaagaagctggag
cgctatggcaacgaattcctggcggtgatcactggtgagagcgaggcgctgcatccgatg
cggcgcaagttggccgggcgcgatgcggggtctctttatgatgcgctgatggagacgcag
acacgtctcgcgcggggcaatgacggcaccgacaagccgcttagctgttctgcggcgcaa
ctggcgaaactggcgcagatgcgtccacaggacgaaatggtgatcacaaggctgttaggg
gagcgccgcgcggaacgttttgcggcggcgtttctggacgtcctgcgcggcgcgggctag
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integrated database retrieval system
