Phaeobacter gallaeciensis DSM 26640: Gal_00278
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Entry
Gal_00278 CDS
T02968
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gal_00278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgd03021
]
Gal_00278
03400 DNA repair and recombination proteins [BR:
pgd03400
]
Gal_00278
Enzymes [BR:
pgd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gal_00278
Transcription machinery [BR:
pgd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gal_00278
DNA repair and recombination proteins [BR:
pgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gal_00278
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHD08077
LinkDB
All DBs
Position
279057..283193
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGEGIMGVFQSV
FPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK
SRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGNITDLLVPFE
HIVGKFVAKDIINEENGAIYVEAGDELTLEYDKGGELIGGTVKELIDAGITDIPVLDIDN
INVGPYMRNTMAQDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIISCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNEAKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVSTRQSG
DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEIVARDSGAAIMAKRGGIIDQIDAQRIVIRATSDLEMGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGQEVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELGILDRNIYARLRGMLLGKTAVKGPKGIKAGSEITEEL
LETLSRGQWWMLALEDEQSAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKVDDALQDYRRSGDLTPVREAMHHAYGDDVYGEGIADMTETD
LVEAAGNVTRGVPIATPVFDGAKEADVNDALVRAGFDTSGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtcttcgcaaatactacggtaaaatccgcgaa
gtcctggacatgccgaacctcatcgaggtccagaaatcttcttacgacctcttcctgcgc
tctggtgatgcagaacagccgctcgacggcgaaggcatcatgggcgtgttccagtcggta
ttcccgatcaaggactttaatgagacgtcggttctggaattcgtgaaatattccttcgag
cgtccgaagtatgacgtcgaggaatgcatgcagcgcgacatgacctactcggctccgctg
aaggtcacattgcgtctgatcgtctttgatgtggacgaagataccggcgccaagtcggtg
aaggacatcaaggaacaggacgtctacatgggcgacatgcccctgatgacgccaaacggc
acttttgtggtcaacggcaccgagcgtgtgatcgtatcccagatgcaccgttcgccgggc
gtgttctttgatcacgacaaaggcaagacgcattcttcgggcaagctgctgtttgcctgc
cgcatcatcccgtatcgcggctcctggctagacttcgaattcgacgccaaggacatcgtc
tttgcgcgtatcgaccgtcgccgcaaactgcctgtgacaaccctgctgtatgccctgggt
ctcgatcaggaaggcatcatggatgcctattacaacaccgtgaacttcaagcttgagaag
agccgtggctgggtcacgccgttcttccccgagcgcgtacgcggcacccgtccgacctat
gatctggttgacgcagccactggtgagatctttgccgaagcgggcaagaaggtcacgccg
cgcgccgtcaagaagatgatcgacgaaggcaacatcaccgacctgttggtgcccttcgag
catatcgttggcaagtttgtcgccaaggatatcatcaacgaagaaaacggcgccatctat
gtcgaggccggcgatgagctgactctcgaatacgacaaaggcggtgagctgattggcggg
acggtcaaggaactgatcgatgccggtatcaccgacatcccggttctggacatcgacaac
atcaatgtcggcccctacatgcgcaacaccatggcgcaggataaaaatatgggtcgcgac
actgcgctcatggatatctaccgcgtcatgcgcccgggtgagccgccgaccgttgaagcg
gcctccgcgctgtttgacacgctgttcttcgattccgagcgttatgacctctccgccgtt
ggccgtgtgaagatgaacatgcgccttgctctggatgctgaggacactcagcggaccctg
cgcaaggaagacatcatctcctgcatcaaggcgctggttgagctgcgcgacggcaagggc
gacatcgacgacatcgaccaccttggcaaccgtcgtgtgcgctccgttggcgaactgatg
gaaaaccagtaccgtgtcggccttctgcgtatggaacgtgcgatcaaggaacggatgtcc
tccgtcgagatcgatactgttatgccgcaggatctgatcaacgcgaaaccggctgctgcg
gctgtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctctccgaagtgacgcacaagcgtcgcctctcggcgcttgggcctggcggtctgacccgt
gagcgtgctggttttgaggtgcgcgacgttcacccgacccactatggtcgtatgtgtccg
attgagacaccggaaggcccgaacattggtctgatcaactcgctggcgacctttgcccgt
gtgaacaagtacggtttcatcgaaacaccttaccgtgtcgtcaacgaggcgaaggtgacc
gacgaagtccactacatgtccgcgacggaagaaatgcgtcacaccgtggcgcaggcgaac
gcgacacttgatgaagatggcaagttcatcaatgatctggtttcgacccgtcagtcgggc
gactacactcttgccccgcgtgagagcgttgacctgatcgacgtttcgccgaagcagttg
gtctccgttgcggcctcgctgattccgttccttgagaacgacgatgcgaaccgggctctg
atgggttcgaacatgcaacgtcaggcggttccgctgctgcgcgcagaagcaccgctggtc
ggcaccggcatcgaagagatcgtggcacgggattccggcgcggccattatggcgaagcgt
ggcggtatcatcgaccagatcgacgcacaacgtatcgtgatccgggcgacctctgacctc
gaaatgggcgacgcgggtgtggacatttaccgcatgcgcaagttccagcgttcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtaggccaggaagtccgcaagggcgaa
gtgattgccgatggtccgtccaccgatatgggtgaactggctctgggtaaaaacgtcgtc
gtggccttcatgccctggaatggctacaactacgaagactccatcctgatctccgagcgc
atcgcgcgtgacgacgtcttcacctcgatccacatcgaagaattcgaagtcgcagcccgt
gataccaagcttgggccggaagagatcacccgcgacatccccaacgtcggtgaagaagcg
ctgcgcaacctcgacgaggcaggcatcgtttacatcggtgcggatgtggaaccgggcgat
atcctcgtcggtaaaatcactccgaagggcgaaagcccaatgaccccggaagaaaagctg
ctgcgcgccatctttggtgaaaaagcatctgacgtgcgcgacacttcactgcgcgtgaag
ccgggtgactacgggactgtggttgaggtgcgtgtcttcaaccgtcacggcgttgagaaa
gacgagcgtgcgctgcagatcgagcgtgaagaagtcgagcgtctggcccgtgaccgggac
gacgagctgggcattctggatcgcaacatctacgcacgtctgcgcggcatgctgctgggt
aaaactgccgtcaaaggccccaaaggcatcaaggctggttctgaaatcactgaggagctg
ctggagacactcagccgcggccagtggtggatgctggcgttggaagacgagcagagcgca
caggtcgtcgaggccctgaacgagcagtacgaagcacagaaacgtgctctggatgcccgt
tttgaggacaaggtcgagaaagtgcgtcgtggcgatgatctgccgccgggtgtgatgaag
atggtcaaagtcttcatcgctgtgaagcgtaagcttcagccgggcgacaagatggctggc
cgtcacgggaacaaaggtgtgatctcgaaagtggtgccgatggaggacatgccgttcctc
gccgatggtaccccggtcgatttctgtctgaacccgctcggcgttccgtcgcggatgaac
gttggtcagatcctggaaacccacatgggctgggccgcacgcggtctgggcatcaaagtt
gacgatgcgttgcaggactatcgtcgctccggcgacctgaccccggttcgtgaagcgatg
caccatgcctatggtgacgacgtctacggtgaaggtattgccgacatgaccgagaccgat
ctggtcgaggccgcaggcaatgtgacccgtggtgtgccgatcgcgacacctgtctttgac
ggcgccaaagaggccgacgtcaacgacgctctggtgcgcgctggctttgacacctccggt
cagtcgatcctgtttgatggccgcaccggcgagcagtttgcccgtcctgtgaccgttggc
atcaagtacctgctgaaactgcaccacctggtcgacgacaagatccacgcacgttcgacc
ggtccgtactccctcgttactcagcagccgctgggtggtaaggcgcagttcggtggtcag
cgctttggtgagatggaagtctgggctctggaagcttacggcgccgcctacaccctgcag
gagatgctcaccgtgaaatcggatgacgtcgcaggccggaccaaggtctatgaatcgatc
gtcaagggcgaggacaactttgaagcgggcgtaccggaatcgttcaacgttctggtcaag
gaagtccgtggtctcggcctgaatatggaactcctggatgcggaggttgaggagtga
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integrated database retrieval system
