Phaeobacter gallaeciensis DSM 26640: Gal_02034
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Entry
Gal_02034 CDS
T02968
Name
(GenBank) Diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd00300
Lysine biosynthesis
pgd00470
D-Amino acid metabolism
pgd01100
Metabolic pathways
pgd01110
Biosynthesis of secondary metabolites
pgd01120
Microbial metabolism in diverse environments
pgd01230
Biosynthesis of amino acids
Module
pgd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Gal_02034
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Gal_02034
Enzymes [BR:
pgd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Gal_02034
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Acyl-CoA_dh_M
Acyl-CoA_dh_1
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AHD09784
LinkDB
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Position
complement(2069867..2072335)
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AA seq
822 aa
AA seq
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MTDLFPDTDLRHLNEVAASVGTPFYLYDASVLRARLDALRAALPAVDFFYSLKSNPNLSV
AGVLHDHGAGCEVSSLLELETSLRAGATPDRILMVGPGKSKTELGRAVELGIKAIVVESA
HELTQINQLAGDRGCVQDIALRVNPDFHAGGAKLNMSGRPTQFGIDQAELPAALTQVENC
SHLRLCGLHAYMGTRILSHDTVVANVRNILDLAAELMPSLQDQLDFVDVGGGFGIPYYDG
EEELDLDALGREVTPLVQSFAASHPQTRVVIELGRYLSGPSGQFVTRVQQIKHSKGESFA
VCDGGSNVHVAAAGQGFLRKNFPIRLLRDGQITPQEEAVQPWTLTGPLCTPQDVIGKSVP
MAAPKVGDLISIGQSGAYGPTASPVNFLGFGAPAEVMIDGASLTLVRGRDTVDARLAVQH
PQDLRADSCSNPAVLADLYSTAPGNGLEGTAFAHPCLERLSGLQPLFRETGARLDRDPES
WTALWENPTVRALTTIGVPEEFNGFALRDSGLGISDCPYGLHVAMVERLARFDANCILAL
PGPSLSGGAVLATGTEAQIARFFDGYRFGPQGTFFAVTEPNAGSDASNGRSTLGMKNGQL
VLNGVKTLVGGIARADIGLFFAHIEETGRMGLVMIRPSDAPECVKIERLSTNGLRGADLC
QMTLRDFPVTRDMILGSGGRSLRDGFMAINGVFERNRPMVAAMALGSGRGLIELMLEDPA
RLPSYQDLLARHTALLVQLVGVIQAQVSGRPRVQDISRVKMQAVSFVDEVVRRITDQDPM
RFLCDAELRRRCRDVKAFEYMEGTSNIHLLNAYRSYAAGVSQ
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctgttcccagataccgacctgcgccatctcaacgaggtcgcggcgtcggtc
ggcacccctttctatctttatgacgcctcggtgctgcgcgcccggctggacgcgctcaga
gcagcgctgccagcggtcgattttttctactcgttaaagtctaacccgaacctttcggtg
gcaggcgtactgcatgatcatggtgcgggctgcgaagtgtcgtcgctgcttgagcttgag
accagcctgagggccggggccaccccggatcggatcctgatggtcggaccgggcaaatcg
aagacagaactggggcgcgcggtcgaacttgggatcaaggccatcgttgtggaatccgcg
catgagctcacccagatcaaccagctcgcaggcgatcgcggttgcgtgcaggatattgca
ctgcgggtgaacccggatttccacgccggcggggccaagctgaacatgagcggccgtcca
acccagtttggcattgatcaggctgagctgcccgctgccctgacacaggttgagaactgc
tcgcatctgcggctatgcgggctgcacgcttatatggggacgcggatcctgtcccatgac
accgtggttgcaaatgtccgcaacattcttgacctcgccgctgagctgatgccgagcctt
caggaccagctggattttgttgatgttggcggcggattcggcatcccgtattacgacggc
gaggaagagctggatctggacgctctgggccgggaggtcaccccgcttgttcaaagcttc
gccgccagccatccgcaaacccgtgtggtgattgagctggggcgctacctatccggccca
tccggtcagttcgtgacacgcgtgcagcagatcaagcatagcaagggcgagagctttgcg
gtctgcgatggaggctccaacgtgcatgtggccgctgccgggcaggggttcctgcgcaag
aatttcccgatcaggctgctgcgggatgggcagattacgccccaagaagaggccgtgcag
ccctggaccctgaccggcccgctttgcacgccgcaggacgtgattggaaaatcggtcccg
atggcggcaccgaaagttggtgacctgatttccatcgggcaatccggcgcctatgggcct
accgcctcgccggtgaacttccttggttttggcgccccggcggaggtcatgatcgacggg
gcatcgctgacgctggtgcgtggccgggacacggttgatgcgcggctggccgtccagcac
ccacaggacctgcgcgccgactcctgctcaaaccctgccgtgcttgccgatctttattcc
acagcgccggggaacggtctggaggggacagcctttgcgcatccctgtctggagcggctc
agcggtttacaaccgctattccgtgaaaccggggcgcggctggaccgcgatcccgaaagc
tggacggccctttgggagaacccgaccgtgcgggcgctgacaaccattggtgtaccggag
gagttcaacggctttgctctgcgcgacagtggtcttgggatctccgattgcccctatggg
ctgcatgtcgccatggtcgaacgtctcgcccggtttgatgccaattgcattctggcgcta
cccggcccgtcattgtccggtggcgctgtgctggccacaggcaccgaagcgcagatcgcg
cgctttttcgatgggtatcggtttggcccgcagggaacattctttgctgtgacggaaccc
aatgcggggtccgatgcgtccaacgggcgcagcacgctgggcatgaaaaacggccagctg
gttctgaatggcgtcaagacgctggttggtggcattgcccgcgccgatatcggcttgttc
ttcgcccatatcgaagagaccggtcgcatggggctggtgatgatccgcccctcggatgcg
ccggagtgtgtgaagatcgaacggctttcgaccaacgggttgcgcggcgcagatctctgc
cagatgaccctgcgggatttcccggtgacacgggatatgatcctcggcagtggcgggcgg
tcgcttcgtgatgggttcatggccatcaacggtgtcttcgaacgcaaccgccccatggtt
gccgcgatggcgctgggctcgggccgtggcctgattgagctgatgttggaggacccagcg
cggctcccgtcttaccaggatctgctggcccgtcacacggccttgctggtccagctggtc
ggggtgatccaggcacaggtaagcggtcgcccccgtgttcaggatatcagccgggtcaag
atgcaggcggtcagcttcgttgacgaggtggtgcgccggatcactgatcaggatccgatg
cggttcctctgcgatgcggagctgcgccgtcgctgccgagacgtcaaagcctttgaatat
atggaaggcaccagcaatattcacctgctgaacgcctatcgctcttatgcggcgggggtg
agccaatga
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integrated database retrieval system