Phaeobacter gallaeciensis DSM 26640: Gal_03984
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Entry
Gal_03984 CDS
T02968
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03420
Nucleotide excision repair
pgd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gal_03984
03430 Mismatch repair
Gal_03984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgd03400
]
Gal_03984
Enzymes [BR:
pgd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gal_03984
DNA repair and recombination proteins [BR:
pgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gal_03984
MMR (mismatch excision repair)
Other MMR factors
Gal_03984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
AAA_11
AAA_30
UvrD_C
Skp1_POZ
SCF
Motif
Other DBs
NCBI-ProteinID:
AHD11692
LinkDB
All DBs
Position
pGal_B134:complement(26779..28623)
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AA seq
614 aa
AA seq
DB search
MTAELKPTEADKKIAECIAKDVSFSVIAGAGSGKTTSLVEALKGIQRSRGNELRKNGQRV
VCITYTNRAVGVISSRLGFDDLFYVSTLHGFLWAEIARFQDAIRETLRDAIVPQHMEKAR
EKDNGGTSQAAQKARKDLERLTAQLAALNAHKPPICYEETVISDYSKCVLNHDDVIDVAA
YLITNKPLLRKGLGFKYPYIFVDEAQDTFPQVVEALNAVCADEGLPIVGYFGDPMQQIYD
KRAGGFAGPKGSEKIPKEENFRSSTSVIDLLNNFRTDLKQVPGGKNSDVKGSVLITIAQA
PDPAGPRKTYTSEQLDEVTAKFEEAVEQWGWTDITPVKNLFLARQMIARRLGFVTLHKLF
TGDYSSSRSQSDYEDGTHYLLKPFVDGIFSLVDASRNNYPKKLIETLRRISPAFDDTGAN
KSKTLKQMLEEASKHAAALAEKWEGNTVKEILEYCSANALYPISDRLAGQLARAPRQAYD
SGNEDHQREKGDWLADEFFKLKADELEKYIEFLDENSPFSTQHGSKGEEYENVLVMIDDI
EAAWNTYSFSKVLTPGVAGNPTDRQQELTQKLAYVCFSRAEVNLRILMFSKAAEAAKKEL
VERGLFQDSQVSIL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagaactcaagccaactgaggccgataagaaaattgctgagtgcatcgccaag
gacgtttcattttcggttatcgcaggcgctggttcaggcaaaaccacatcgctcgttgaa
gctctgaaaggaatccagaggtcccgtggaaacgagcttcggaaaaacggtcagcgcgtg
gtgtgtatcacatacacaaaccgtgccgttggagtgatttcgtcgcgtctaggtttcgat
gacctcttttacgtttccactctgcacgggttcctttgggcggaaatcgcgcgcttccag
gatgctattcgggagacccttcgtgatgcgatcgtcccgcaacatatggaaaaggcccgc
gagaaagacaacggggggacgtctcaggccgctcaaaaagcgaggaaagaccttgagcgc
ctgactgcccaacttgctgcgctaaacgcgcataaaccgccgatatgctacgaagaaacc
gttatcagcgactattccaaatgtgtcctgaaccatgatgatgttattgacgtcgcggcc
tatctaatcacgaacaaaccactcttgcgcaaaggcctcgggttcaaatacccctacatc
tttgtcgatgaagctcaagacaccttcccgcaggtcgtcgaggcgctcaatgctgtgtgc
gcggacgaaggtttaccaatcgtcggatatttcggcgatccgatgcagcagatttacgat
aagcgtgccggaggttttgccggtccaaaaggctccgaaaagattccgaaggaagagaat
tttcgaagctcaacctcggtgatcgaccttctcaacaacttcagaaccgatctgaagcag
gttccgggtgggaagaactccgacgttaagggcagcgtcttgattacgatcgcgcaggct
cccgaccctgccggtccacggaaaacctatacctctgaacaactcgatgaggtaacggcg
aagttcgaggaagccgttgaacaatggggatggaccgatattactcctgtaaagaacctt
tttctggcacgccagatgatcgcccggaggctcggattcgttacactgcacaagctcttt
acaggtgactattcgtcgtccagatcccaatccgactatgaagacggcacgcactatctt
ctcaagccctttgtggacggcattttttctttggtcgatgcatcccgcaacaactatcct
aaaaagctgattgaaacactccgaagaataagccctgcttttgacgacactggagcgaac
aagagcaaaaccctcaaacagatgctcgaggaagcctcaaaacacgccgctgctttggca
gaaaaatgggaaggcaatacggtcaaagaaattctggaatactgtagcgcgaacgcgctt
tatccaatttcggaccgccttgcaggtcagttggctcgcgctccccgccaagcttatgac
tccggcaatgaggatcaccaaagggaaaaaggagattggctggctgatgaattcttcaag
ctgaaggctgacgaactcgaaaagtacatcgaatttctggatgagaattctcctttcagt
acgcagcacggctcgaaaggcgaagagtatgaaaacgtgctggtcatgatcgacgatatc
gaggcagcctggaatacctacagcttttcgaaagttctgacccctggtgtcgcgggcaat
ccgaccgaccggcagcaagaacttactcaaaagctggcttatgtctgtttttcacgggcg
gaagtgaaccttaggattttgatgttttcgaaagccgcggaagcggccaaaaaagaactg
gttgagcgcggtttgttccaggacagccaggtttcaattttatag
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