Pluralibacter gergoviae: LG71_01400
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Entry
LG71_01400 CDS
T03300
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pge
Pluralibacter gergoviae
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pge03019
]
LG71_01400
Messenger RNA biogenesis [BR:
pge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LG71_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AIQ98641
UniProt:
A0AAU8RFJ0
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All DBs
Position
complement(297183..299123)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLIGLTIFVTLIGCSLSFYNGIQQKIDSRVRAVATIIDSRLITTPFRQ
LDQQLDEIMVPVDIVRIQCVIDGKIIFSHARNSSYQPMGSSYRFRELSVPLMRNPGMTIQ
LRYLDPVVNDFDSLLTTAPLTFAIAFMVLTIFFAVRWLRNQLSGQELLERRSTRILNGER
GNQVRGSVHEWPALASSALDALLAEIQFAGEQRSRMDTLIRSYAAQDNKTGLSNRLFFDN
QLATQLEDPDKVGSYGIVMLIRVPEFDLLRDNWGRAAAEEHFHTFINMLSTFMMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAVNTLPPTKILDRDDIMHIGICSWRSGQTT
TQVMDHAEAAVRNAVLQGSNSWAVYDDTLPEKGRGNVRWRTLIEEMLTRGGPRFYQKPAL
QYDGRVHHRELMCRMYDGKEEVAAAEYMPMVIEFGRAEEYDRLQITRLLPFLSFWPEENL
AMQVTVASLIRPRFQRWLRDTLMQCEKSQRKRIIFELAEADVCQHISRLQPVVRLITALG
ARVVVIQAGLTLVGTSWIKELSVEVIKLHQSLVRNIEKRSENQLLVQSLVEACKGTSTQV
YATGICSRSEWQVLRECGVLGGQGVFFAPVQPLDTSVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttccgcttttgtgacgctgcttatcggcctgactatcttt
gtcacgcttatcggctgttcactcagcttctataacggcattcagcaaaagatagactcc
cgcgtgcgcgccgtggcgaccattatcgactcccgtctcattacaacgcccttcaggcag
ctcgatcagcagctggatgagatcatggttcccgttgatattgtgcgtattcagtgcgtc
atcgacggtaaaatcatcttcagccacgcgcgcaacagcagctatcagccgatgggcagc
agctatcgctttcgcgaactcagcgtgccgttgatgcgcaaccccggcatgaccattcaa
ctgcgctatctcgatccggtggttaacgacttcgactccctgctgacgaccgcgccgctg
acctttgctatcgcctttatggtgctgactatcttctttgccgtgcgctggttgcgcaat
cagctctccgggcaggagctgctggagcggcgctcgacgcgcattctcaacggcgagcgg
ggcaatcaggtgcgcgggtcggtgcatgaatggccggcgcttgccagcagcgccctcgac
gcgctgctggcggaaattcagtttgccggcgagcagcgcagccgcatggatacccttatc
cgctcttatgccgctcaggataataaaaccgggctcagtaaccggctgttctttgataat
cagctggcgacccagcttgaagaccccgacaaagtcggttcttacggcatcgtgatgctg
atccgggtgccggaatttgacctgctgcgcgacaactgggggcgcgccgccgcggaagag
catttccacaccttcattaatatgctctccacttttatgatgcgctatcccggcgcgctg
ctggcgcgctatcaccgcagcgactttgcggtgctgctgccgcaccgcacgctgaaagag
gcggacagcattgccgggctgctgctgaaggcggtcaacaccctgccgccgaccaaaatt
ctcgaccgcgacgacatcatgcatatcggtatctgcagctggcgcagcgggcaaaccacc
acccaggtgatggatcacgctgaggcggcggtgcgcaacgcggtgctgcagggcagcaac
agctgggcggtgtatgacgacaccctgccggagaagggcaggggcaacgtgcgctggcgc
acgctgattgaagagatgcttacccgcggcggtccgcgcttttatcaaaagccggccctg
cagtacgatggccgcgtgcaccaccgggaactgatgtgccgcatgtacgacggtaaagaa
gaggtggcggccgccgagtacatgccgatggttatcgagtttggccgcgccgaagagtat
gaccgcctgcagatcacccgactgctgcctttcctgtcgttctggccggaagaaaacctc
gccatgcaggtaaccgtcgcctcgcttattcgcccccgtttccagcgctggctgcgggat
acgctgatgcagtgtgaaaaatcgcagagaaagcggattatttttgaacttgcagaggcg
gatgtttgtcaacatatcagccggttacagcccgtggtgcgtttgatcacggcattaggc
gccagagtggtggttattcaggccggattgaccctcgtgggcaccagctggatcaaggag
ctgtcggttgaagtgattaagctccatcagagcctggtgcgtaatatagagaagcgtagc
gagaatcagctgctggtgcagagcctggttgaagcctgcaaaggaacatccacccaggtt
tatgccaccggcatctgcagccgcagcgagtggcaggtactaagagagtgcggcgtatta
ggcggtcagggggtattttttgcgcctgttcagccgcttgataccagcgtgaaaaaatat
tcgcaaagatactctgtttag
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