Pluralibacter gergoviae: LG71_01875
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Entry
LG71_01875 CDS
T03300
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pge
Pluralibacter gergoviae
Pathway
pge03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LG71_01875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pge03021
]
LG71_01875
03400 DNA repair and recombination proteins [BR:
pge03400
]
LG71_01875
Enzymes [BR:
pge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LG71_01875
Transcription machinery [BR:
pge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LG71_01875
DNA repair and recombination proteins [BR:
pge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LG71_01875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AIQ98726
UniProt:
A0A089PES3
LinkDB
All DBs
Position
complement(393564..397784)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG
QASLHARVKVRITEYEKDANGEFVATTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPQKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGLVMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
FNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLDDGVQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSEFLEGEQAEYSRIKIANRELEADGKIGATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRIRRRAAGEPTA
APQVSAEEASASLAELLNAGLGGSDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgcccgt
atctttgggccagtgaaagactatgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggcgttatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgcccacatctggttcctgaaatccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctacgtggtaatcgaaggcgggatgaccaacctggaacgtaaccagatcctg
accgaagagcagtacctcgacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgctgaaaaacatggacctggagcaggagtgtgaaacc
ctgcgcgaagagctgaacgaaaccaactctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtccggtaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggacggcggtcgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggccgcgccggatatcatcgtgcgcaacgaaaagcgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgcggtcgcgcgatcaccggttccaac
aagcgtccgctgaaatcgctggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctggagctgttcaaaccgttc
atctacggcaagcttgagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcctcgacgaagtgatccgcgaacacccg
gtgctgctgaaccgtgcgccgactctgcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaagcgattcagctgcacccgctggtttgtgccgcgtacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtcccaggacgtggtactgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagccgagcgtctctaccgctctggc
caggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagacgctaac
ggcgaattcgttgcgaccaccagcctgaaagacacgaccgtcggtcgcgccattctgtgg
atgatcgtgccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagct
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttc
gctgaccagaccatgtacaccggctttgcctacgcggcccgttcaggtgcctccgtcggt
atcgacgacatggttattccgcagaagaaatacgaaatcatttctgaagccgaagccgaa
gtggctgagattcaggagcagttccagtccggtctggtgaccgctggcgaacgttacaac
aaagtcatcgatatctgggctgcggcgaacgatcgcgtatccaaagcgatgatggacaac
ctgcagaccgaaaccgtcattaaccgtgaaggtaaagaagagcagcaggtctcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgctgcccagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgtcgtctg
gttgacgtggcgcaggatctggtggttaccgaggacgactgcggcacgctggaaggcctg
gtgatgaccccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgacggcagaagacgtgctgaagccgggtactgctgacattctggtaccgcgc
aacaccctgctgcacgaacagtggtgtgacctgctggaagccaactccgttgactcggtg
aaagttcgctccgttgtatcctgcgaaactgacttcggcgtgtgtgcccactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcggcc
cagtccatcggtgagccgggtactcagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcattcaggtcaagaacaaaggtagcatcaagctg
ttcaacgccaagtcggttgtgaactccagcggtaagctggtggtgacctcccgtaacacc
gagctgaaactgatcgacgaatttggtcgtaccaaagagagctataaagtgccttacggt
gcggtgatggcgaagggcgacggcgagcaggttgcaggcggcgaaaccgttgccaactgg
gatccgcacaccatgccggttatcaccgaagtgagcggtttcatccgcttcaccgacatg
atcgacggccagacgattacccgtcagaccgacgaactgaccggtctctcttccctggtg
gttctggattccgcagaacgtactaccggtggtaaagacctgcgtccggcgctgaaaatc
gtcgacgcccagggcaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcgatcgttcagctggacgatggcgtacagatcggtgcgggtgacgcc
ctggcgcgtattccgcaggaatccagtggtacgaaagatatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcattatctccttcggtaaagagaccaaaggtaagcgccgtctggtgatcaccccggtt
gacggtagcgatccgtacgaagagatgatcccgaaatggcgtcagctcaacgtgtttgaa
ggcgaacgcgttgaacgcggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgcggcgttcacgcggtgacccgctacatcactaacgaagtgcaggacgta
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgtgaatgcaggcagctccgagttcctggaaggcgagcaggct
gaatactcccgcatcaagatcgccaaccgcgagctggaagcggacggcaaaatcggcgca
accttcgcgcgcgatctgctgggtatcaccaaagcgtctctggccaccgagtccttcatc
tccgcggcctcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgcctgatcccggccggt
accggttacgcgtaccaccaggaccgcatccgtcgtcgcgccgctggcgagccgaccgct
gcaccgcaggtgagcgcggaagaagcttctgcaagccttgcagagctgctgaacgcaggc
ctgggcggttctgacgattaa
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integrated database retrieval system
