Pluralibacter gergoviae: LG71_05070
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Entry
LG71_05070 CDS
T03300
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pge
Pluralibacter gergoviae
Pathway
pge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG71_05070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pge03019
]
LG71_05070
03400 DNA repair and recombination proteins [BR:
pge03400
]
LG71_05070
Enzymes [BR:
pge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LG71_05070
Messenger RNA biogenesis [BR:
pge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG71_05070
DNA repair and recombination proteins [BR:
pge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LG71_05070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIQ99317
LinkDB
All DBs
Position
1066337..1068166
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVMNQVSLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIP
ALVMDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRTGKVRLLY
IAPERLMLDNFLDNLSHWSPAMVAVDEAHCISQWGHDFRPEYAALGQLRQRFPAVPFMAL
TATADDATRSDIVRLLGLHDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGISAGAYHAGLENSVRAEVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPPGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQAPCGNCDICLDPPRQYDALEEARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGRDRSHEHWVSVIRQLIHLG
FATQNIARHSALQLTEAARPVLRGEVPLQLAVPRVQALKPRVSQKSYGGNYDRRLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQIPTSPGEMLSVNGVGVRKLERFGQEFLALIR
AHADGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtaatgaatcaggtatcgctggcaaagcaggtgttgcaggaaacg
ttcggctaccagcagttccgccccggtcaggaaacgatcattgagaccgtgctggagggc
cgcgattgcctggtggtaatgcccaccggcggcggcaagtcgctgtgctaccagatcccc
gcgctggtgatggacggcctgacggtggttgtttcaccgctgatttcgctgatgaaggac
caggtcgaccagctgctcgccaacggcgtggcggcggcctgcctcaactcgacccagagc
cgggagcagcagcaggaggtgatggcgggctgccgtaccggcaaagtgcgcctgctctac
atcgcgcccgagcgcctgatgctcgataacttcctcgataacctcagccactggagtccg
gcgatggtggcggtggacgaggcgcactgtatctcccagtggggccacgatttccgcccg
gaatatgccgccctcggccagctgcgccagcgcttccccgccgtgccgtttatggcgctg
accgccaccgccgatgacgcgacccgcagcgacatcgtgcgcctgctcggcctgcacgat
ccgctgatccagataagcagcttcgaccggcccaatatccgctacatgctgatggaaaag
ttcaagccgctcgaccagctgatgcgctacgtgcaggaccagcgcggtaaatccggcatc
atctactgcaacagccgctcgaaggtggaggacaccgccgcccgcctgcagagccggggc
atcagcgccggcgcctatcacgccgggctggagaacagcgtccgcgccgaagtgcaggaa
aaattccagcgcgacgatctgcagatcgtggtggccacggtggccttcggcatgggcatc
aacaagcccaacgtgcgcttcgtggtgcacttcgacatcccgcgcaatatcgaatcctac
tatcaggagaccggccgcgccgggcgcgacggcctgcccgctgaggcgatgctgttttac
gatccggcggatatggcgtggctgcggcgctgcctggaggagaagccgccgggccagctg
caggatatcgagcgccacaagcttaacgcgatgggcgcctttgccgaggcgcagacctgc
cgccgcctcgtgctgctgaactatttcggcgaggggcgccaggccccctgcggcaactgc
gatatctgcctcgatccgccgcggcagtacgatgcgctggaggaggcccgcaaggcgctc
tccaccatctaccgcgttaaccagcgcttcggcatgggctacgtggtggaggtcctgcgc
ggcgccaacaaccagcgcatccgcgagatgggccacgacaagctgccggtatacggtatt
ggccgcgatcggagccacgaacactgggttagcgtgattcgccaactgatccacctcggc
ttcgccacccagaacatcgcccgccactccgcgctgcagcttaccgaagccgcacggccg
gtgctgcgcggcgaggtgcccctgcagctggcggtgccgcgcgtgcaggccctcaagccc
agagtcagccagaaatcctacggcggcaactatgaccgccggctgttcgccaagctgcgc
aagctgcgtaaagccattgccgatgaagagaacattccgccctacgtggtgttcaacgac
gcgacgctgattgagatggccgagcagatccccaccagccccggcgagatgctcagcgtc
aacggtgtaggcgtgcgcaagctggagcgcttcggccaggaatttctggcgctgatccgc
gcccacgcggacggcgacgacgaggagtag
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