Pluralibacter gergoviae: LG71_18965
Help
Entry
LG71_18965 CDS
T03300
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pge
Pluralibacter gergoviae
Pathway
pge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG71_18965 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pge03019
]
LG71_18965 (rne)
03009 Ribosome biogenesis [BR:
pge03009
]
LG71_18965 (rne)
Enzymes [BR:
pge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LG71_18965 (rne)
Messenger RNA biogenesis [BR:
pge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG71_18965 (rne)
Ribosome biogenesis [BR:
pge03009
]
Prokaryotic type
rRNA processing factors
LG71_18965 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIR01851
UniProt:
A0AAU8R1S5
LinkDB
All DBs
Position
4027573..4030887
Genome browser
AA seq
1104 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRAAISAIETRQGGVRCIVVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPSEDEPAERKRPEQPALAAFVMPDAPPA
PVSEAPVAPAAAPKAAAPAAAAAAPGLLSRICAALKKIFGGSEEAVAEPQPEKKEEKAER
PQPQERRRPRQNGRRDRNERGDRSERNDRGERNDRSERNDRSERNDRSERRDSSEGREEN
RRNRRDRQQQNAEVRESRQQTPADDTDSAKSRDEQPPRRERRRRTGDDKRQASPEVKAQT
RDEQPVAQAVQESDREERVQTMPRRKPRQLDQKVRILSVAEIAEAAHAAEAAQAAEAAQA
AQAPAQRTELAKVDLPAVVDAPAEQDDSADGRESAGMPRRSRRSPRHLRVSGQRRRRYRD
ERYPSQSPMPVEFACASPEMASGKVWISYPVARSQEEMAAEEVRKPEAAQPAAEDAAILP
TAAETAAPVTEPVVTEAAAVAPAVVEAAPVVETAHPEAIAAPVDEVPQVIAREDEAVAEA
TAEEAVAAAPAEAEAQADAEAPAETAAEATAEPVAEPAVDTAPAAEPAPLQHVEPVAEAA
PAAEVQPAAKVEAPAAPVKTAAPAAGGYADAPMTRAPAPEYVPEAPRHSDWVRPDFAFDG
KGTAGGHSATRVATAGPTRPQPTE
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaggagttgcgtgtcgccctggtggat
gggcagcgtctgtacgacctggatattgaaagtccgggccacgagcagaaaaaagcgaac
atctacaaaggcaaaattacccgcattgaacccagcctggaggccgcattcgtagactac
ggtgccgagcgccacggctttctccctctcaaagaaatcgcccgcgaatacttccccgct
aactacagcgcgcacggccgtccgaacatcaaagacgtgctgcgcgaaggtcaggaagtt
atcgtccagattgataaagaagagcgcggcaacaaaggcgcggcgctgaccacctttatt
agcctggcgggcagctacctggtgctgatgccgaacaacccgcgcgcgggcggtatctct
cgccgtatcgaaggcgacgatcgcaccgaactgaaagaagcgctctccagcctgcagctg
cctgacggcatgggcctgattgtccgcaccgccggcgtcggaaaatccgccgaggccctg
cagtgggatctgagcttccgcatgaagcactgggaagcgattcagaaagccgccgaaagc
cgccctgcgccgttcctgatccatcaggaaagtaatgtgattgttcgcgccttccgcgac
tatctgcgccaggatatcggcgaaatccttatcgataacccgaaagtccttgagctggcc
cgccagcacattgccgcgctgggccgtccggatttcagcagcaaaattaagctctacaca
ggtgaaatcccgctgttcagccactaccagatcgaatcgcagattgagtccgccttccag
cgcgaagtgcgcctgccgtccggcggttccatcgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcccgcgccacccgcggcggcgacattgaagagacggcctac
aacactaacttggaagcggcggatgaaatcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgttatcgactttatcgacatgacgccggtgcgccaccagcgcgcggtggaa
aaccgcctgcgcgaagccgtccgtcaggaccgcgcccgcattcagatcagccacatttcg
cgcttcggcctgctggagatgtctcgccagcgcctgagcccgtccctcggcgagtccagc
caccacgtctgcccgcgctgcagcggcaccggcaccatccgcgacaacgaatcgctggcg
ctctctattctgcgcctgatcgaagaagaagcgctgaaggagaacaccaaagaggttcac
gccatcgtgccggtgcaggttgcctcttacctgcttaacgaaaagcgtgcggccatcagc
gccatcgaaacccgtcagggcggcgtgcgctgcatcgtggtgccgaacgaccagatggaa
accccgcactactccgtgctgcgcgtacgtaagggcgaagagacctcaaccctgagctat
ctgctgccgaagctgcacgaagaggagatggccctgccgtctgaagatgagcctgcggag
cgcaagcgcccggagcagcctgccctggccgccttcgtgatgcctgatgcgccgcctgcg
ccggtttctgaggcgccagttgccccggccgccgcgccgaaggccgctgctccggcagcc
gctgccgctgcgccaggcctgctgtcgcgcatctgcgccgctctgaagaagatcttcggc
ggcagcgaagaagccgtcgccgagccgcagccggagaagaaagaagagaaagcggagcgt
ccgcagccgcaggagcgccgtcgtccacgtcagaacggccgccgcgaccgcaatgaacgc
ggcgaccgtagcgaacgcaacgatcgcggcgagcgtaacgaccgcagcgagcgtaacgac
cgcagcgagcgtaacgaccgcagcgagcgtcgcgacagcagcgaaggccgcgaagagaac
cgccgcaaccgccgcgaccgccagcagcagaatgcggaggtgcgcgagtcgcgccagcag
acgccggctgacgataccgacagcgcgaagagccgcgacgagcagccgccgcgccgcgag
cgccgccgccgcaccggcgacgataagcgccaggcctctccggaagtcaaagcacaaacc
cgcgacgagcagccggtcgcccaggcggtccaggaaagcgatcgcgaagagcgcgttcag
accatgccgcgccgcaagccgcgtcagctggatcagaaagttcgcattctgtctgtcgcc
gagatagccgaagccgcccacgccgcagaagccgcgcaggccgctgaagctgcacaggca
gcacaggctccggcgcagcgcaccgagctggcgaaggttgacctgccagcggtagtggat
gcgccggcggagcaggacgatagcgccgatggccgcgagtctgccggcatgccgcgccgc
tcccgccgctcgccgcgccacctgcgcgtcagcggtcagcgccgccgccgctaccgcgac
gaacgctatccgagccagtcgccgatgccggttgagtttgcctgcgcatcgccggaaatg
gcgtccggtaaagtgtggatcagctatccggttgcccgtagccaggaggagatggccgca
gaagaggtccgcaagccagaagccgcccagccggccgctgaagacgccgctattctgccg
accgctgccgaaactgccgcacccgtgaccgagcctgtcgtcaccgaggccgccgcagta
gcgcctgcagtcgttgaggccgctccggttgtggaaaccgcgcatccggaagccatcgcc
gcgccggtagatgaagttccgcaggtcattgcccgcgaagacgaggccgttgccgaagcg
accgcagaagaagcggttgccgcagccccggctgaagctgaggcgcaggctgacgcagag
gcgccggccgagaccgctgccgaagcgactgctgagccagtggcagagcctgccgtcgac
accgcgcctgccgccgagcctgctccgctgcagcacgtcgagccggtcgcggaagctgcg
ccagccgccgaagttcagccggcagcgaaagtagaagcccctgccgcgccggtcaaaacc
gccgcgccggctgccggcggctacgccgatgcgccgatgacccgcgctccggcgccggag
tacgtgccggaagccccgcgccacagcgactgggtgcgcccggactttgccttcgacggt
aaaggcaccgcaggcggccacagcgcgacccgcgtcgccaccgccggtccgacccgtccg
cagccgaccgagtaa
DBGET
integrated database retrieval system
