Pseudochaenichthys georgianus (South Georgia icefish): 117439002
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Entry
117439002 CDS
T09629
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117439002 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117439002 (lamb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
117439002
NCBI-ProteinID:
XP_033930560
LinkDB
All DBs
Position
23:complement(13575139..13600361)
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AA seq
1780 aa
AA seq
DB search
MSLIILVITTLALWTSVRAQQFPEFPDVCTEGSCYPATGDLLIGRAHKLSVTSTCGLKEP
ERFCIVGHLEEEKKCFLCDSRKPFHENKNQGSHSINNLVTTFAHNRLKTWWQSENGVENV
TIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCETSFPGVSSGP
MVKVDEILCDSHYSDIEPSTEGEVIFRVLDPVFKIDDPYSLRIQNMLKITNLRVNFVKLH
TLGDNLLDHRDEVTEKYYYALYDMVVRGNCFCYGHASECAPIDGEPSSAEGMVHGRCVCN
HNTKGLNCEHCQNFYHDLPWRPAEGRNTHACKRCECNQQSSSCHFDMAVYMTTGNVSGGV
CDACQHNTVGRQCEQCRPFYFQHPNRDLRDPRVCEPCNCDPAGSLQGGQCDSHTDVAAGL
ISGQCRCKANVEGERCDHCRQGHHGLGEGPNGCLPCSCSALGTLPRGNPCDSETGRCSCK
RFVDGHNCDQCLPQHWGLSNDMDGCRPCDCDQGGAVNNSCDPHSGQCVCREHMFGRRCNQ
VESGFYFIALDHYTYEAEDAKYGPGVTVVPRPYPLDRSPTWTGMGFVNVPEGAYLEFNID
NVPESMDYDILIRYEPQLPEQWEQGKIRVQRPVFNPPNYDAHCSNSIQSGDEQTISLPPG
SRHVLLVRPVCFERGLNYTIRLTLPLYSSVADIQSPYTLIDSLVLIPRVREMDMFVGVDG
DGAWDTFQRYRCLEGSQSVVKSPLTDICNDYIFSVSALLHKGAMACQCDPQGSLSAVCEP
SGGQCRCRHNVVGRNCDQCAPVTFQFSPAGCRPCDCDPRGSITAFCHEATGQCECVPGAT
GRQCSHCLPGFWGFPQCRPCHCNGHSEFCHPQTGECQGCRDFTSGHHCERCLEGYHGDPE
LGSGGHCRACMCPDGPRSGRQFSDSCYLLAHTDQLVCVCSPGYKGARCDECSPGYFGNPL
VPGGRCLPCQCNSNIDMHDPASCDARTGACLKCRHHSEGYSCQHCKLGYYGNAASQSCRK
CMCFSVGTSPRSCSSPGECQCDQVSGHCACKPNVVGQNCDRCAANTWDIASGTGCKRCDC
DPEHSSGSSCNEVTGQCSCKAGFGGNTCRECRELFWGDPEDECHACDCDPQGISSDQCHR
ATGQCTCVEGVSGPRCDQCARGYQGEFPACAPCHQCFAIWDKVVGELTNQTQRLEAQVTE
LKDSGVTAQYKDVIKKLNGSVWAVREILETNPAGLRLGEIEDLMHRITGVMSYLNGELNT
TEDALILLHRDANATDATLDALTEEANQMEQSVQELRQQVYNAKNANIQGAMDTITSAHM
KSIQAELQANSSTSDPGNTLDQSAMMRNDTENILSASQKGFDRAYKRNSQKLDKMTDELD
KLHLSELSEKICGGAADVEGCSSSPCGGLGCVGADGAPQCGEGCTGLRSTSHSALKSSED
LDEKLLEAMQEVDKLSRMVWEANNRAKDAKVNALEVLGKSNRSKERVEQSNEQLRTLIKE
IRDLLTNEKADVAVIEAVSNEVLALEMPASVGKLKKLTEEIREKVSSLSNVETILGQSAR
DIQVAEELLKQAQAASEEASQMKGTTDIVKAALDETERAQNIAMDAIQLAQNNTKGTLEL
LISVESETAMSELKLSNTTGRLLQLEMEVGLLRQNNLEVTRLVEGANRTTEQARLNAEEA
QQEFDVEVKDKMVEVEDLVEDKGETVLQAKRRADKLQREAKQLLDQSSMQLKRLEEVESS
YESNQRILEEKAAELVELERRVRQVLEEISYKVTLYSTCN
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttataatcctcgttataacaactttggccctgtggacctccgtcagggcgcag
cagttcccagagttcccggatgtttgcaccgagggcagctgctaccccgccacaggtgac
ctgctgattggccgcgcgcacaagctcagcgtcacctccacctgcggcctgaaggagccc
gagcgcttctgcatcgtcggacatctggaggaagagaagaaatgttttttgtgcgactcc
aggaagccttttcatgagaacaaaaaccaagggagccattccatcaacaacctggtcacc
accttcgcccacaaccgtctgaagacctggtggcagtctgagaacggtgtggagaatgtg
accatccagctggacttggaggctgagtttcacttcacacatcttatcatgaccttcaag
acttttcggccagctgccatggtgattgagcggtcgatggacttcgggaagacgtggcag
gtttatcgttacttcgcctacgactgtgaaacatctttccccggcgtgtcctcagggccg
atggtcaaagtggacgagatcctctgtgactcccattactctgacatcgaaccatccact
gagggagaggtgatatttcgggtgctggaccctgtcttcaaaatagacgacccctacagc
ctgagaatacagaacatgctgaagatcaccaacctccgggtgaacttcgtgaagctccac
acgctgggcgacaacctgctggaccaccgagatgaggtgacggagaagtattactacgcc
ctctacgacatggtcgtccgcggcaactgcttctgctacggtcacgcctccgagtgcgcc
cccatcgacggagaacctagctctgcagagggcatggtccatggccgctgtgtgtgtaat
cacaacacaaagggactgaactgtgagcactgccaaaacttttaccacgatttaccttgg
agacctgcggagggacgaaacacacacgcctgcaagaggtgtgagtgtaaccaacagtcc
tcatcctgtcacttcgacatggcggtgtacatgacgacgggcaacgtgagcgggggggtg
tgtgacgcctgtcagcacaacacggtgggccggcagtgcgagcagtgcagacctttctac
ttccagcaccccaaccgggacctgagggacccccgagtctgcgagccatgtaactgtgac
ccggcgggctctctgcagggtggacagtgtgactcgcacacagacgtggccgctgggctg
atctcgggtcagtgtcgctgcaaagcaaacgtcgagggcgagcgctgcgaccactgcaga
cagggacaccacggcctgggggaggggcccaacggctgcctgccttgttcctgtagcgcg
ctgggcaccctgcccagaggaaacccctgcgactcagagacaggaaggtgctcctgcaaa
cgcttcgtcgatggacacaactgcgatcagtgtctgccgcagcactggggtctgtccaat
gacatggacggctgcagaccatgtgactgtgaccagggcggggctgtcaataatagctgt
gaccctcactcggggcagtgtgtgtgcagggagcacatgttcggccggcgctgcaatcag
gtggagtcgggcttctacttcatcgctctggatcactacacctacgaggcggaggacgcc
aagtacggccctggtgtgacggtggtaccgaggccgtaccctctggaccgcagtcccacc
tggaccggtatgggctttgttaatgttccagaaggagcttacctggagttcaacatcgac
aacgtcccagagtccatggactatgacatccttattcgctatgagccgcagctgccagag
cagtgggagcagggcaaaatccgagtgcagcgtcccgtcttcaaccctccgaactacgac
gctcactgcagtaactccatccagagcggagacgagcagaccatctctctaccacctgga
tccaggcacgtgctgctggtgaggccggtgtgcttcgagagaggactgaactacaccatc
cgcctcacgctgcctctctactcgtcagtcgctgacatccagagcccgtacacactcatc
gactctctggtgctgattccccgggtccgagagatggatatgttcgttggggttgacggt
gatggagcgtgggatacgttccagcgctaccggtgtctggagggcagccagagcgtggtg
aagagcccgctgaccgacatctgcaacgactacatcttcagcgtctctgccctgctgcac
aaaggagccatggcatgccagtgtgaccctcagggttccctcagcgctgtgtgtgagccc
agtggtggccagtgtcgttgtcgacacaacgttgttggcaggaactgcgaccaatgcgcc
ccggtaacgtttcagttcagccccgccggctgcagaccttgtgattgtgaccctcggggt
tcgatcactgcattctgccacgaggccacgggccagtgcgagtgtgtccccggggccacg
gggcgccagtgctcccactgcctgccgggcttctggggcttccctcagtgcagaccctgc
cactgtaacggccacagcgagttctgccaccctcagaccggagagtgccagggctgcaga
gacttcaccagcggacaccactgtgagaggtgtctggagggttaccatggagacccagag
ctgggttcagggggccactgtcgagcctgcatgtgtcccgatggtcctcgcagcggacgc
cagttttctgacagctgttaccttctggctcatactgaccaactggtgtgtgtgtgcagc
cctggctacaaaggtgccaggtgtgatgagtgttctccgggttatttcgggaaccctctg
gttcccggtggccgctgcctgccctgccagtgtaacagcaacatcgacatgcacgacccg
gcttcctgcgacgctcgcaccggggcctgtctgaagtgccggcaccacagcgagggctac
agctgccagcactgtaaactgggttactacggcaacgctgcctcccagagctgcaggaag
tgcatgtgtttctctgtggggacctcaccccggtcctgctcctcccccggcgagtgtcag
tgcgatcaggtcagcggtcactgcgcctgcaagcccaacgtggtcgggcagaactgcgac
cgctgcgccgccaatacctgggacatcgccagcgggacggggtgcaaacgctgcgactgc
gaccccgaacactcctccggatcctcctgcaatgaggtcacaggacagtgctcgtgtaaa
gcaggttttggtggcaatacgtgtcgggagtgcagagagctcttctggggggatccagag
gacgaatgtcatgcttgtgactgcgaccctcaggggatctccagtgatcagtgccaccgt
gcgacaggtcagtgcacctgtgtggagggggtctccggcccccgctgtgatcagtgcgct
cggggctaccagggggagtttcccgcctgcgcaccctgccaccagtgctttgccatctgg
gacaaggtggtgggcgaactgaccaatcagacgcagcgtctggaggcccaggtgacagag
ctgaaggacagcggcgtgacggcacagtacaaggacgtgatcaagaaactgaacggaagc
gtctgggctgtgagagaaatcctggaaaccaatcctgccgggctgaggctgggggagatc
gaggatctgatgcaccggattaccggtgtcatgtcctacctgaacggagagctgaacaca
acggaggacgcattgatcctgctccacagagacgccaacgccaccgatgcaacgctggac
gcactgactgaggaggccaaccagatggagcagagcgtccaggagctgaggcagcaggtg
tacaacgccaagaacgccaacatccagggtgccatggacaccattacatctgcacacatg
aagtctatacaggcggagctccaggccaacagctccaccagcgatcccggcaacacgctg
gaccagtcggccatgatgcgaaatgacactgagaacatcctcagcgcgtctcagaaaggg
tttgaccgcgcatacaaaagaaactcgcagaagctcgacaaaatgaccgacgagctagat
aaactccacctttctgaactgagcgagaagatttgtggtggggcagctgatgttgaagga
tgctccagctccccctgtggtggtctgggttgtgttggggcggacggagcgcctcagtgc
ggcgaaggatgcacaggcctccgctcgacatcccactctgctctaaaatcctctgaagat
ttggacgagaagctcctggaggcgatgcaggaggtggacaagctctccaggatggtatgg
gaggccaacaaccgcgctaaggacgcaaaggtgaacgctctggaagtgctggggaaatca
aaccggagcaaagagcgggtggagcagagcaacgagcagctgcgcaccctcatcaaagag
atacgagacctgctcaccaatgagaaggcagatgtggcggtgatcgaggcggtgtccaac
gaggtgttggctctggagatgccggcgtcggtgggaaagctgaagaagctgacggaggag
atcagggagaaggtgagctctctgagtaacgtggagaccatcctggggcagagtgctaga
gacatccaggtcgcagaggagctgctcaaacaggcccaggctgccagtgaggaggcttct
caaatgaaggggacaacagacatagtgaaggcggcactggatgagactgagcgtgctcag
aacatcgccatggacgccatccagctcgcccagaacaacacgaagggaaccctggaactg
ctgatctccgtggagtcggagacggccatgtcggagctgaagctcagtaacaccacgggg
cgcctgctgcagctggagatggaggtgggcctcctgaggcagaacaacctggaggtgacc
cgcctggtagagggcgccaaccggaccaccgagcaggcccggctgaatgcagaggaggcc
cagcaggagttcgacgtggaggtgaaggataaaatggtggaggtggaggacctggtggag
gacaaaggggagacggtgctgcaggcgaagaggagagcagacaagttacagagggaggcc
aaacagctgctggatcagagcagcatgcagctgaagagactggaggaggtggagagttcc
tacgagtccaaccagcggatcctggaggagaaagctgcagagctggtggagctggagaga
agggttcggcaggtcctggaggagatcagctacaaagtcactctgtacagcacctgcaat
taa
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