Pseudochaenichthys georgianus (South Georgia icefish): 117439504
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Entry
117439504 CDS
T09629
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117439504 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117439504 (hbs1l)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117439504 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
117439504
NCBI-ProteinID:
XP_033931300
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All DBs
Position
24:20310285..20336770
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AA seq
691 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDVYGQSVDDDYCISPATANQFIYSRQERQTPREQPLEEEEY
EDDVPMSPTVSLNLDPLDQAKLFSCLDHMRTVLGDAVQDSVLTQAAISCGFDPQKALDAV
LSEDAKTAPVTKSTNEETASAAIASQEKAPLPQRIKKEAVAEKAKSRDVSHNKLDSEVVP
KVARMTISGKKQTMGFDVPSVNGVVGTPERPTAASASEATPKRPETPSKGSNGDEPSTVS
TPGRSGKARQTINIKEELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNQRTMH
KYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIP
NMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNW
QQQRFQDITSKLGHFLKQAGFKDSDVYYIPSSGLSGENLTTRSSVSELTSWYSGPSLMQQ
IDAFKAPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAMPPNETCTVKG
ITLHDEPLDWAAAGDHVSLTVTGMDIIKIKVGYVFCDPKEPVRVCTRFRARILLFNIEVP
ITQGFPVLLHYQTVSEPATIRKLISVLHKSSGDVIKKKPKCLSKGMNAIVEIQTQRPVAL
ELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggcacagaaatgttcgaggttataactacgatgaagactttgacgatgatgac
gtgtatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcagttc
atctactcacgtcaagagaggcaaacaccaagggagcagccgttggaagaggaagaatat
gaagatgacgtacccatgtcccctaccgtcagcctcaacctagaccctcttgatcaagcc
aaactgttttcctgtctggatcatatgcggactgtgttgggagatgcagtgcaagactca
gtcctgacccaggcagccataagctgtggatttgacccacagaaggccttggatgcagtc
ctctctgaagatgctaagacagccccggttaccaaaagcaccaatgaggagacagcttca
gccgcaatagcaagccaggagaaagcgccgcttccacaaagaatcaagaaagaggccgtt
gctgagaaagctaaaagcagagacgtgtcccacaataaactggactctgaagtcgtcccc
aaagtggcccgcatgaccatctcagggaagaagcagaccatgggcttcgatgttccaagt
gtgaatggtgttgtcgggacccctgaacgccccacagcagcctcggcctccgaggccacg
cccaagcgtccagagactccatctaaaggctcaaatggagacgagccctccacagtttcc
accccgggacgctctggaaaggcccggcagacgatcaacatcaaggaagaactggagaag
aggcagggcggaaaacctctgttaaatttggtggttataggtcacgtggatgcaggtaaa
agcactctgatgggccacctgctctatctgctgggcaacgtcaaccagcgcaccatgcac
aagtatgagcaggagtccaagaaggcgggaaaggcctcctttgcttatgcttgggtcctg
gatgaaactggcgaggagagggacagaggtgtgacgatggatgtgggcatgaccaagttt
gagacggactcaaaagtggtgacactaatggatgcgcccggacacaaagacttcatcccc
aacatgatcacaggagctgcacaggccgacgtggcggtgctcgtggtggacgccagccgg
ggggagttcgaggcaggcttcgaggcaggggggcagaccagagaacacgccctgttggta
cgctcgctcggcgtcactcagctcgctgtcgctgtcaacaagatggaccaggtaaactgg
caacaacagcgtttccaagacattacttccaaacttggacattttctcaagcaggcagga
ttcaaggactctgatgtttactacatccccagcagcggcctgtcaggagagaacctcacc
accaggagttcagtgtcggagctcacatcctggtactctggccccagcctgatgcagcag
attgacgccttcaaagcccctcagcgatctgtagaaaaaccgttcagactgtgcgtttcc
gatgtgttcaaagaccagggttcaggcttctgtgttaccgggaagatcgaggctggttac
attcagaccggagaaagaatacttgctatgccccccaatgaaacctgcacggtcaaaggt
atcactcttcacgatgagcctctagactgggctgcagcaggagaccatgtcagcctgacg
gtcaccggcatggacatcatcaagatcaaagtgggctatgtgttctgtgatcccaaggag
cctgtacgagtgtgtactcggttcagagcccggatccttctcttcaatatcgaggtcccc
atcacacaaggcttcccagtattgctgcattaccaaacagtgagtgagccagccaccatt
aggaaactgataagtgttctacacaaaagcagcggcgacgtcatcaagaagaaaccaaag
tgtttgagtaaaggtatgaatgccatcgtggagatccagacgcagaggccggtggcatta
gagctgtacaaagactacaaggaactcggccgcttcatgctcagatatgtcggctccacc
atagctgcaggggtcgtcactgagatcaaagaatga
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