Pseudochaenichthys georgianus (South Georgia icefish): 117439697
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Entry
117439697 CDS
T09629
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a isoform X3
KO
K08518
syntaxin-binding protein 5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117439697 (stxbp5a)
Membrane trafficking [BR:
pgeo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117439697 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
117439697 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Prp19
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Lgl_C
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Beta-prop_VPS8
Synaptobrevin
CFAP43_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
117439697
NCBI-ProteinID:
XP_033931579
LinkDB
All DBs
Position
24:21260397..21358229
Genome browser
AA seq
1088 aa
AA seq
DB search
MKKFNIRKVLDGLKEVSSSTPSVQVGPQENHLIQETLQSDHFQLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQSGALRLFGRPGVECYCQHESGAAVIQLQFLINEGALVSALADDSVHL
WNLRQKRPAILHSLKFSKERITFCHLPFQSKWLYIGTERGNIHLVNVESFMLSGYVIMWN
KAIELSTKAHPGPVVHISDNPMDEGKLIIGFESGIVVMWDLKSKKADSRYTYDEAIHSVA
WHHEGKQFICSHSDGTLTIWNIRGQGKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTR
IGEPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYANDFQEPYA
VVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGTVKFWDASAMMLQVLYKLKTAKVFDR
NRSKEDKGSTETSDEDPFAIQIMAWCPESRMLCVAGVSANIIIYRFSKLEVTTEVVQLLE
VRMQYELNDIESPDGGEPALPTPGASPQTSGPPSHPSTSSNNSDGGNMPCLKVRSTPLKQ
SAGYQVDLVVQLVWVSGEPPQQITSLALNSSYGLVVFGNSNGLAVVDYVQKTVVLNLGTV
ELYGSNDPYQRQPRSPRKTRQPSGGLCDINEGSATSEDRCKSPTSDHRDNSFSRSRSSSV
TSIDKEAREAISSFHFSDTFARKGDSTLTPCLYVGTTLGTVLALSLTLPPAGEQRQLQPV
ILSPTGMLVRLKGSIMRMALLDSTGSMLPPAFEPWFEPNVTADGEEREKVRKRRPVSVSP
STSQDLNESQYAVVCSEKQAKVISLPSQTCIYKHSITEASFILRADVVQMSQGVSLACFC
ANGHIMTLSVPGLRPLMDVNYLPLTDMRIARTFCFTNLGQAMYLCSPTEVQRITYSQDTC
ENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGEISSGKANRSLAQHIPG
PGGLEGMKGAASGVVGDLARARIALDERGQKLGELDERTAAMMTSADSFSKHAHEMMLKC
KDKKWYQL
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaacatcaggaaggtgctggacggcttgaaagaggtttcctcatccacc
ccgtctgtccaagtggggccacaggagaaccatctgatccaggagaccctccagtccgac
cacttccagctctgcaagactgtccgtcatggcttcccctaccagccgtcgtccatggct
ttcgaccccgtgcagaagatactggccatcggcacccagagtggggctctcagattgttt
ggtcgtccaggggtggagtgctactgtcaacacgagagtggagcagccgtcatccagcta
cagtttctcatcaatgagggagcgctggtgagtgctctggctgacgacagtgttcacctg
tggaacctgaggcagaagagacctgccatcctccactcactcaagttcagcaaagagaga
ataactttctgccacctgcccttccagagtaaatggctgtacatcggcacagaacggggg
aacatccacctcgtcaacgtggagtcctttatgctctcaggctacgtcatcatgtggaac
aaagccattgaactgtcaaccaaggctcaccctggaccagttgtgcatataagcgacaac
cccatggatgagggaaagcttataattggatttgagtctgggatcgtggtcatgtgggat
ctgaaatcaaagaaggccgactctcgctacacttacgatgaggctatccactcagttgcc
tggcatcacgagggcaagcagttcatttgcagtcactcagatggaactctgaccatatgg
aacatcagaggccagggcaagcccatacagacaatcaccccgcacggaaaacagcccaag
gacgggaagaagccagagccttgtaaacccattctcaaagtagagtacaaaaccactaga
attggtgagcccttcatgatcctgtctggtggtctctcctatgacacggtgggccggcgg
ccatgtttgacagtaatgcatgggaagagcaccgccgtgctggagatggactatcctatc
gtagacttcctcacactgtgtgagacaccatacgccaatgattttcaggaaccttacgct
gtggtggtccttctagaaaaagatttagtggtgatcgaccttgcacaaaatggttacccc
atattcgagaacccgtatcctctgactatccatgagtctcctgtgacctgctgcgagtac
tttgccgactgccctgtggacctcatacctgcactttactccgtcggctcgcggcagaaa
cgacagggctacagcaaaaaggaatggcctattagtggtggaaactggggtcaaggcaca
cagagctacccagagatcatcatcactgggcatgctgatgggactgtgaagttctgggat
gcctctgcaatgatgctccaggtgctctataaactcaaaacagccaaggtttttgacaga
aacaggtccaaggaggacaagggcagcaccgagacgtcagatgaagaccccttcgccatt
cagatcatggcctggtgccctgagagcaggatgctatgtgtggccggggtgtcagcgaac
attatcatctaccgcttcagcaaactggaagtaactaccgaggtggtgcagttactagag
gtgcgaatgcagtacgagctgaacgacatagagtctccggacgggggagaaccggcgctt
cccacccccggtgcctcccctcagacaagcggcccaccgtcacacccctccaccagcagc
aacaactctgacggcggcaacatgccctgcctcaaagtgcgcagtactcctttaaagcag
tctgcaggctaccaggtagatttggtggtccagttagtgtgggtgagtggagagcccccg
cagcagatcacaagtctggcgctcaattcctcctacggtcttgtggtgtttggcaacagt
aacggtctggcagtggtggactacgtccagaagacggtagtgctcaacttggggacggtg
gagctttatggctccaacgacccttaccagagacagccccgctcgccaagaaagacacga
cagccctctggaggtctgtgtgacatcaacgagggctcggccacatcagaggaccgctgc
aagtcccctacttcagaccatcgggacaattctttcagccgttcgcgctcctccagcgtc
accagtattgacaaggaagccagagaggccatcagctccttccacttcagtgacaccttc
gcccggaagggggacagcacgttgacgccctgcctgtatgtgggcactactctgggcacc
gtgctggctctatctctcacattgccacctgctggggagcaacggcaactgcagccagtt
atcctttcacctacaggcatgttggtgcggctgaagggcagcatcatgcggatggctctc
ctggactcaacaggttcaatgctgccgcctgcgtttgagccttggtttgaacccaacgta
acagcagatggggaagaaagagagaaggtccgcaagcgccggcctgtctcagtgtccccc
tccacctcccaggacctcaacgagagccagtatgctgtggtgtgttcagagaaacaggcc
aaagtaatttccctcccctcccagacctgcatctacaaacacagtatcactgaggcctcc
ttcatcctgcgggcagatgttgtgcagatgagccaaggcgtatctctggcctgtttctgt
gccaatggccacatcatgacactcagtgtgccggggctgagaccactcatggatgtaaac
tacctgcctttgactgacatgcggatagcaaggacgttctgcttcactaacctgggtcag
gccatgtacctctgctcccccactgaggtccagaggatcacctacagccaggacacctgt
gaaaacctacaggagatgctgggggaactttttacaccggtggagacaccagaggcgccc
aacagagggttcttcaaaggcctcttcgggggaggagctcagtccctggacagagaggag
ctatttggtgagatttcttctggaaaggcaaaccgaagtctggcccagcacatcccaggc
ccgggtggcttggaggggatgaagggggcagcatcaggtgtggttggagacttggctcgt
gcccggatagcgctggatgaaagaggccagaaactgggcgagctggatgagaggacagct
gccatgatgaccagcgcagattccttttccaaacatgcccatgagatgatgctgaagtgc
aaagacaaaaaatggtaccagttgtaa
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