Pseudochaenichthys georgianus (South Georgia icefish): 117439860
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Entry
117439860 CDS
T09629
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117439860 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117439860 (cdc40)
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
Step II factors
117439860 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
117439860
NCBI-ProteinID:
XP_033931864
LinkDB
All DBs
Position
24:complement(21831692..21854822)
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AA seq
583 aa
AA seq
DB search
MAATIASLVSYGSGSDSENESESNSGVEKVDPANPDATAHLKPLKSAPTMSVALLDLAPE
VAVKEAVETGTHLDPSLKEVTFNPTYETLFAPELGPMNPFKSQQMSAPRNMLSGYAEPAH
LNDFMFESQRRTFSTFGYALDPSVDTHQVTPTTNSYIGAVDEAEKNKGLTVFESGTKKTE
KRKKIKGGDAGEIEEFLGPWAKFIDEKDGAKPSEEEQKELDEITAKRQKKGRSEEEAPAE
EKTVLHVKDMYDYQGRSYLHVPQDVGINLRSSEAPDKCYLPKKQIHVWSGHTKGVSAIRL
FPSSGHLLLSSSMDCKIKLWEVYGERRCVRTFIGHSKAVRDICYNNSGTKFLSAAYDRHL
KLWDTETGQCISRFTNRKVPYCVKFNPDEDKQDLFVAGMSDKKIVQWDIRTNEVVQEYDR
HLGAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWL
ACQSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWD
WKTTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGLIKLWD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaccatagcttccctcgtttcgtacggtagcggttctgattcagaaaatgag
tccgaatcaaattctggtgttgagaaagtggacccagcgaacccggatgccacggctcac
cttaaacctctcaagtctgcacccacaatgtctgtggctcttctcgatctcgctcccgag
gtcgccgttaaggaagcggtggagactggcacacacctggacccttcattgaaagaagtc
acgtttaacccgacatatgaaaccttgtttgcaccagagttagggccgatgaacccgttt
aaaagccagcagatgtccgcccccaggaacatgttatctggctatgcagaacctgctcac
ctcaacgacttcatgtttgaatcgcaaaggaggaccttctccacctttggttatgcttta
gatccatcagttgacacacaccaggtaactcccaccactaatagctacattggcgcagtg
gatgaggcggagaaaaataaagggctcactgtgtttgagagtggaacaaagaagacagag
aaaaggaaaaagatcaaaggtggagatgcaggagaaattgaagagttccttggaccatgg
gcgaaatttatagatgagaaagacggggccaagccatcagaggaagagcagaaagagctg
gatgagatcacagccaagaggcagaagaagggcaggagcgaggaagaagctcccgcagaa
gagaaaactgttctccacgttaaagacatgtatgattaccagggcaggtcctatctccac
gtcccacaggatgtgggcatcaacctgcgttcttcagaggctccggacaaatgttacctg
cctaagaaacagattcatgtctggtccggacacaccaagggtgtcagtgccatccgacta
tttcctagctctggtcatcttctgctctcgtcctccatggactgtaagatcaagttgtgg
gaagtgtacggcgagaggaggtgtgtacggacatttattggccacagcaaagcagttcga
gacatttgctacaacaactctggaaccaagttcctcagcgctgcctacgatcgccacctg
aaactctgggacactgaaacaggccagtgtatctctcgcttcaccaacagaaaggttccg
tactgcgtcaagttcaacccagacgaggacaaacaggatctctttgtggccggcatgtct
gataagaagattgttcagtgggacatcaggaccaatgaggtggttcaggagtacgaccgt
cacctgggagccgtcaacaccatcacctttgtggatgagaatcgccgctttgtcagcacg
tcagacgataagagtcttcgagtttgggagtgggacatcccagtggacttcaagtacatc
gccgagccgagcatgcactccatgccagcagtgacactttctcccaacggtaaatggctg
gcttgtcagtccatggacaaccagattctgatctttggggcccaaaaccgcttccgactg
aacaagaagaaggtcttcaaaggtcacatggttgctggctatgcctgccaagtggacttc
tccccagacatgagctatgtggtgtcaggagatgcggatggaaagctgaacatttgggat
tggaagaccaccaagctctaccacaggatcaaggctcatgacaaagtgtgcatcagcgca
ctgtggcacccgcacgaaacctccaaggtcatcacctgcggatgggatggactaatcaaa
ctctgggattaa
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integrated database retrieval system
