Pseudochaenichthys georgianus (South Georgia icefish): 117440016
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Entry
117440016 CDS
T09629
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo02010
ABC transporters
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117440016 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117440016 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pgeo02000
]
117440016 (abca1a)
Transporters [BR:
pgeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117440016 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_15
DUF4162
AAA_29
Motif
Other DBs
NCBI-GeneID:
117440016
NCBI-ProteinID:
XP_033932136
LinkDB
All DBs
Position
1:complement(20628569..20665904)
Genome browser
AA seq
2278 aa
AA seq
DB search
MTVSTQLGLLLWKNFTYRRRQTVQLLIEIIWPLFIFLILISVRIHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGESPGVVGNFNDSIISRLFTDAQKILLYSQKDK
SYEGYTGLLRALRKMQENTARFKLKDFLQDNQTLSHFLHNNASLPHYALKQIVEADVNLE
KVLTKGFGFHLRDLCNTTSLEEFVHIADHNVSRQIQESICNSTSDWLDQAQSHFLSNLDF
FKPIRKDVRSDPKVVQEVAAATDSLLESLGALATELASMKSWKDMRKEILYLTVNPTGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSDHPSSYDNTSTPYC
NNMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGLLRDLGGM
WEEMRPKVWNFMENGEEMDMVRTLLQNSASAAFLNNQLSGTEWRVSDLSAFLSKVSEDKR
PAGSTYTWRNVFNETDQAILTISRFMECVNLDKLEPVANEERLVNKSMGLLHNQKFWAGI
VFPDIAHSNSTELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSY
LQDVIEQGIIRAITGTKEKTGIYIQQMPYPCFVDDMFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAALLVVLLKMGNLLPYSDP
GVVFIFLASFGIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KLIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEGDSYNLTTSISLMLFDAVLY
GIMTWYFEAVFPGQYGIPRPWYFPFTKSYWCGEKENPNISTPLSKKGNAEVCIEEEPSHI
EPGVYIENLVKVYSHGNKLAVDGLSLRFYKGQITSFLGHNGAGKTTIMSILTGLFPPTSG
TAYIHGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEVEQI
VNDVGLPHKRNARTHTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDYD
LALQSCRNSASTVSYIKKAEKEDSVSESSSDAGLGSEPESETTTIDVSLISNLIFKHVKE
ARLVEDLGHEITYVLPYESAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVAE
DSGVDAVELSDGVVPTRTRRHHAFGDHQSCLKPFTEDDFDFNDSEGRPSLPRVQFNESRE
TDWLSGSDGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALIF
SLIVPPFGKYPSLSLDSSMYGEQFTFISNDIPEDPHINKLHSALTEQPGFGTRCMDGQPS
PDSHCTEVGDEWAAPLVSQSVKEMFDNGNWSMENPSPMCECSCEGRKRMLPECPAGAGGL
PPPEMKISETDTLQNLTGRNISDYLVKTYAQIIGKSLRNKIWVNEFRYGGFSLGARGSQL
SSHADQVDEAIAQLKRRFRLERGTAADRFFHSLSNFMQGLDTKNNVKIWFNNKGWHSIGS
FLNVMNNGILRANLPSDKDPTKFGITASNHPLNLTKEQLSQVALMTTSVDVLVSICVIFA
MSFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWLANFVWDMCNYVVPATLVIIIFMCF
QQDSYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVS
TFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPL
AWDMVGKNLFAMAIQGVIFFTITVLIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILN
GGGHSDILEIKELTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSIFKMLTGDST
VTGGEAYLAGKSVTSEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEV
AEWGIRKLGLVKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALW
NAILNIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILR
VAGPDPDLRPVMEFIERELPGSNLKEKHRNMLQYQLPTSLTSLARIFSLLSQNKDTLSIE
DYSVSQTTLDQVFVNFAKDQSDEDHLKDGLLHKRDAVVVDISQLNTFLKDNTTKESCV
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctccactcaactgggtttactgctttggaaaaacttcacctacagacggaga
cagactgtccagctgctgattgagatcatctggcctctgtttatcttcctcatcctgatc
tctgtccgaattcattatccaccctacgagcagcatgaatgccatttccctaacaaggcc
atgccctcggcgggtacgttgccgtgggtacaaggcatcatctgtaacgccaacaacccc
tgcttccgtaatcccaccccaggcgagagtcccggggtggtgggaaacttcaatgattct
ataatctcccgtttgttcactgatgcccagaaaatcctgctctacagtcagaaggataaa
agctacgaaggctacacgggactgctaagggctctcagaaagatgcaggagaacactgct
cgtttcaagctgaaggactttttgcaagacaatcagaccctttcccacttccttcacaac
aacgcctcccttcctcattacgcgctgaagcagatagtggaggctgacgtcaacctggag
aaggtgctgactaaaggttttggcttccatctcagagacctctgtaacacaacgtccctg
gaggaatttgtccacattgctgatcacaacgtgtcccgtcagattcaagaaagtatctgc
aattccaccagcgattggcttgaccaggcccagagccacttcctgtccaacttggacttc
ttcaaacccattcggaaggatgtgaggtcggaccctaaagtggtccaggaagtcgcagca
gcgaccgacagtcttctggagagcctgggagcattggccacggagcttgccagtatgaag
agttggaaggacatgcgtaaggagatcttgtatctaactgtgaaccccacaggatctcct
aaccagatgtatcaggccgtgtcacgtatcgtctgcggacaccctgagggaggcggcctc
aaaatcaagtctctcaactggtatgaagacaacaactacaaggccctcttcggaaaccat
ggcaacgacagtgacagtgaccacccctcatcttacgacaacacttcaactccctattgt
aacaacatgatgcgtagcctggagtccagccccatttcaaggatgatctggagagctctg
aagcctctgctcatggggaagatcctgtacaccccagatactccggccacacagagaatc
atccacgaggttaataagaccttccaggaactcggcctgctgagggacctcggagggatg
tgggaggagatgaggcccaaagtgtggaatttcatggaaaatggagaggaaatggatatg
gtcaggacgctgctccagaatagcgccagtgccgcattccttaacaaccagctcagtggg
actgagtggcgtgtgtcagatttgtccgccttcctgtcgaaagtctcagaagacaaaaga
cctgcaggatccacctacacttggagaaacgtcttcaacgaaaccgaccaggccattctg
accatctcacgcttcatggagtgtgtgaacctggacaagctggagccagtagccaatgag
gagcgattggtcaacaagtccatgggtcttctgcataaccagaagttctgggctggaatc
gtgtttcctgacatcgcccatagcaacagcactgaactgcctcccaacgtcaactacaag
atccgcatggacatcgataatgtggagaggaccaacaagatcaaggatggttattgggac
cccggtcccagggcagaccccttcgaggaccttcgttacatctggggcggattttcttac
ctgcaggacgtcatcgagcagggaatcatccgagccatcactggcacaaaagagaagaca
ggaatctacatccagcagatgccctacccctgctttgttgatgacatgttcctgagggtg
atgagtcggtccatgcctctcttcatgaccctggcgtggatgtactctgtggccatcatc
atcaagggcgtcgtctacgagaaggaggcccgcctcaaagagaccatgaggatcatggga
ctgaataacggaaccctgtggctgagctggttcatcagcagtttgatcccacttctgatc
agcgccgccttgttggtggtgttattgaagatgggcaacctgctgccttacagtgaccca
ggcgtagtgtttattttcctggcatccttcggcattgttaccatcatgcagtgtttcctc
atcagcactctcttctctcgcgccaatctggcagccgcctgcggtggcatcatctacttc
accctctacctgccctacgtgctgtgtgtcgcctggcaggactacgtgggctttggtgca
aaactcattgtgagtctgctctctcctgtggcgttcggttttggctgtgagtacttcgcc
ctgtttgaggagcaaggagtgggcatccagtggtccaacctgctggccagccccctggag
ggcgacagctacaacctgaccacctccatctccctcatgctgtttgacgctgtgctctac
ggaataatgacctggtactttgaagctgtgttccctggtcagtatgggatccccaggccg
tggtatttccctttcactaagtcgtactggtgtggagagaaagaaaaccccaacatctcc
acccctctgtcaaagaagggcaacgctgaagtttgtattgaggaggaaccaagccacatc
gagccaggtgtttacatcgagaatctggtgaaggtgtacagccatggaaacaagctggct
gtagacgggctgtccctgaggttctataagggacagattacctccttcctcggacacaat
ggagctggcaagaccaccattatgtcaatcctcacagggttgtttccacccacatctggc
accgcctatatccacgggaaggacatccgcagcgaactcagcaccatcaggcagaatctg
ggcgtctgtccgcagcacaacgtacttttcagcatgctgacagtcgaggaacacatctgg
ttctacgcccgtctgaaggggctgtcggaggaaaaggtgaaggcagaggtggaacagatt
gtgaacgatgtcggactgcctcacaaacgaaacgctcgcacccacaccctgtctggaggg
atgcagaggaagctttcagtggccctggcttttgttgggggttcaaaagtggtgatccta
gatgaacctactgctggagtcgatccctacgcacgcaggggcatctgggacctgctgctc
aaatacagacaaggccgcaccatcatcctctccacccatcacatggacgaagctgacatc
ctgggtgaccgcatcgccatcatctcccacggcaagctgtgctgcgtaggctcctccctc
ttcctgaagacccagctgggcacgggctactacctgaccctggtcaagagagactacgac
ctggcgcttcagtcctgcaggaactctgccagcaccgtgtcctacatcaagaaggccgag
aaggaggacagcgtatcagaaagcagttcagatgctggtctgggcagcgaaccggagagt
gaaaccaccactattgatgtgtcgcttatctcaaacctgatattcaaacatgtcaaagag
gctcgcctggttgaggaccttggtcacgaaatcacctacgtcttgccctacgaatctgct
aaagacggagcctttgtcgagcttttccacgagctggatgacagactcaccgacctggga
atatccagctatggaatatctgataccaccctggaagagattttcttgaaagttgctgag
gacagtggagtggatgctgttgagctttcagatggagttgttccaaccaggactcgtcgc
catcatgcattcggagaccaccagagctgcctgaagcccttcactgaagacgactttgat
ttcaatgactctgaaggtaggccttcactacccagggttcaattcaatgaatcccgtgag
actgactggctcagtgggtcagatggaaaaggctcataccaggttaaaggctggagtctg
aagagacagcagtttgttgctctcctctggaaacgattcctctacgctcggcgctccagg
aaaggcttctttgctcagattgttctcccggccgtgtttgtgtgtatcgccctgatattc
agtctgattgtccctccgtttggaaagtacccaagtctatctctggattccagcatgtat
ggagaacagtttaccttcatcagtaatgacatacctgaagatcctcacatcaacaaacta
cacagcgctctcacagaacagccaggatttggcacacgttgcatggatggacaaccctca
ccggacagtcactgcactgaagttggggacgagtgggcggcccctctggtctctcaaagt
gtgaaggaaatgttcgacaatggcaactggtctatggagaatccctcccccatgtgtgag
tgcagctgtgaaggacgcaagaggatgctccccgagtgtcccgctggggccggggggctt
ccaccaccagagatgaagatcagtgagacggacactcttcagaacttgactggcaggaac
atctcagactatctggttaaaacctacgctcagatcattggcaagagcctaaggaacaag
atttgggtcaacgagttcagatacggtgggttctcgctgggcgccaggggttctcagctt
tcatcccatgcagatcaggttgatgaagcgatcgctcagctgaagagacgtttccgcctg
gagagaggaactgcagcggatcgtttctttcacagtctctcaaattttatgcaagggttg
gacaccaagaacaacgtcaagatctggttcaacaacaagggctggcacagcatcggttct
ttcctcaatgtgatgaacaatggcatcctgcgggccaatctgccatccgacaaagacccc
actaagtttggcatcactgcctccaatcacccgctcaacctcaccaaggagcagctgtcc
caggtcgcattgatgacgacatcagtggacgtgctggtttccatctgcgtgatcttcgcc
atgtcctttgtccctgccagttttgtggtcttcctcatccaagagagagtcaacaaagcc
aagcacatgcagttcatcagcggagtgcagcctctactttactggctggccaactttgtc
tgggatatgtgtaactacgtcgtcccagcgacactggtcatcattatcttcatgtgtttc
caacaagactcctacgtctcgtccaccaatctgcccgtgctggcgctgctgctgctgctc
tacggatggtcgatcacccctctgatgtacccggcctcgttcttctttaagatccccagc
acggcctacgtggttctgaccagcgtgaacatactgataggaatcaatggcagcgtctcc
acatttgtactggagctgtttggaagcaatgaaatcggtggcatcaacgacatcctgaag
aacgtgttcctcatcttccctcacttctgtctgggcagaggactgatcgacatggtgaag
aatcaggcaatggccgacgctttggagagatttggtgaaaaccggttccgctcccctctg
gcctgggacatggtgggcaagaacttgtttgcaatggctatacagggagtgatcttcttc
accatcaccgtcctcattcagtaccacttcttcttcaaggccaggtcttccaccagtcat
ctgaagcctattggagaggaagacgaggacgtggccagagagcggcagaggatcctgaac
ggaggaggacattcagacatcctggagatcaaagagctcaccaagatctacaagaggaaa
cagaagccggcagtggatcggctgtgtgttggcatcccccccggagagtgttttggattg
ctaggagtgaatggggcagggaaaaccagcatctttaaaatgctgacaggagactccaca
gtcaccgggggagaggcctacctggctggcaagagtgtgacttcagagatagacgaggtg
catcagaacatgggctactgtcctcagtttgatgccatcaacgacctgctgaccggcaga
gagcacctcgagttttacgccatcctgaggggagtgcccgagaaggaagtctgcgaggtg
gcagagtggggcatccgtaagctgggtttggtcaaatatgtggacaagtcagcaggcagc
tacagtggaggcaacatgaggaaactgtctactgccatcgctctcataggaggaccgcct
gtagtctttttggatgaaccaacgacaggcatggatcctaaagcacggcgcgctctgtgg
aacgccatcctgaacatcgtcaaggagggacgatctgtagtcctgacctctcatagcatg
gaggagtgtgaagcgctttgcaccagaatggccatcatggtcaacggcaggttccgctgt
ctgggcagtgtgcagcatctcaaaaacaggtttggggatggctacaccatcatcctgcgg
gtggcgggcccagacccggacctccggccggtgatggagttcatcgagcgggagctccca
ggcagcaatctgaaggagaaacacagaaacatgctgcagtaccagctgcccacctccctc
acctcgctcgcccgcatcttctccctgctctctcagaacaaggacaccctgagcatagag
gactactccgtctcacagacaactttagaccaagtgtttgtaaatttcgccaaggaccaa
agtgatgaggaccatttgaaagacggccttctacacaaacgggacgctgtggtagtggac
atttcacagctgaacactttcctaaaggacaacacgaccaaggagagctgcgtctga
DBGET
integrated database retrieval system
