Pseudochaenichthys georgianus (South Georgia icefish): 117440101
Help
Entry
117440101 CDS
T09629
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117440101
03016 Transfer RNA biogenesis [BR:
pgeo03016
]
117440101
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117440101
Spliceosome [BR:
pgeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117440101
Transfer RNA biogenesis [BR:
pgeo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117440101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
117440101
NCBI-ProteinID:
XP_033932243
LinkDB
All DBs
Position
24:complement(19251523..19262749)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSMPV
IQIVYETLKDEQEGKTGRASIKTGGTIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDVDKGQMSFSKNGNDLGVAFEIPQQLKSQPFFASCVLKNAELKF
NFGGEDFKNAPKSGFVAMDQAPEGHAVKSTQTGSAKVSQVKATSNSPKALIIEPSKELAE
QTLNNVIQCAKYVDNPKLRNLLVIGGVPAKDQMAALEHGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLGKNHVRTDEVHAKDNTRPGAN
SAEMWSEAIKMLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQL
SCVCLHGDRKPNERKTNLERFKKKEVRLLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAEKMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYKEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKASGGGNYKGHVDALAPTVLELANLER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttcggaaatgggtgttatgcctgaaatagcgcaggctgtggaagagtta
gactggctactgcctactgatatccaggcggagtctattccacttattcttggtggagga
gatgttcttatggcagcagaaactggtagtggtaaaacaggggccttcagtatgccagtg
atccagattgtgtatgagaccctgaaggatgagcaggagggcaagactggcagagcttcc
atcaagactggaggaactattttcaacaactggcagatgaatccttatgaccgcagccca
gcctttgcgattggtccagatggactgtgctgccagagcagggagttcaaagagtggcat
ggctgtcgctcaacaaaaggggttaccaaagggaagtactactatgaggtgacctgccat
gaccagggtctatgtcgcattgggtggtccaccagtcaggcagccttggacttgggaact
gataagtatggttttggctttggtgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgataccattggatgctacttggatgtagacaag
ggccaaatgtctttctctaaaaatggtaatgacctgggtgtggcttttgagatccctcaa
caattgaagagtcagcccttctttgcctcctgcgttctaaagaatgcagaactgaagttc
aactttggaggagaagactttaaaaatgcccccaagagtgggtttgttgccatggaccag
gcgccagagggccacgcagtcaaatctactcagacaggcagtgccaaagtgagtcaggtg
aaagcaacatccaattcacccaaagccctgatcatcgagccatctaaagagttggccgaa
caaacccttaacaatgtcattcaatgtgcgaaatacgtggataaccccaaactcaggaac
ctgttggtgattggtggtgtgcctgccaaggaccagatggctgctctggaacatggggtt
gacattgtcgtgggaacacccggaagactggatgacctcatatccaccgggaagctcagt
ctgtcccaagtccgctttctcgtcctggatgagtgtgatggccttctgtccgcaggctat
acagactttatcaacaggattcataaccaaatccctcaggtcacctctgatggcaagaga
ctgcaggtgattgtctgttcagccacactgcattcgttcgacgtgaagaagctgtctgag
cgtatcatgcactttcccacatgggtggatctgaagggggaggactctgtgcctgagagt
gtgcaccatgtggttgtgcctgtcaatcccaagaacgaccgcctctgggagcgcctgggc
aagaaccacgtccggactgatgaggtccatgccaaagataacaccagaccaggagcaaac
tctgcggaaatgtggtcagaagccatcaagatgctaaagggtgagtacacagtgagggcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagatcgactgcgac
aacatggaacagtacttcattcagcaaggaggaggtccggacagtaaaagccaccagttg
tcctgcgtttgtctccatggtgatcgtaagcccaatgagcgtaagactaacttggagcgt
ttcaagaaaaaagaagtgaggctgttgatctgcacagatgtagctgccagaggaattgac
gtccatggagttccgtatgtgattaatgtcaccctgccagatgagaagcagaactacgtc
catcgtatcggcagagtcggaagagccgagaaaatgggactggccatttccttggttgct
atggaaaaggaaaaggtgtggtaccacgtttgtgcgaacagaggcagaggctgctacaac
acgcgactgaaggaggacggaggttgcaccatctggtacaaagagaaagagctcctttca
gatattgaggagcatctgaagtgcaccatcacacagtgcgagccagacatcaaagtacct
ttggatgactttgatggaaaggtcacctatggtcagcgtaaggcttcgggaggtggtaac
tacaagggtcacgtggatgctctggcaccaacggtcctggaactggctaaccttgagagg
gaagcccaatcttccttcctccacctgggatacatgccaaaccagcttttcagagccttc
tga
DBGET
integrated database retrieval system
