Pseudochaenichthys georgianus (South Georgia icefish): 117440389
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Entry
117440389 CDS
T09629
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117440389
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
117440389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
HTH_37
NOC3p
Motif
Other DBs
NCBI-GeneID:
117440389
NCBI-ProteinID:
XP_033932612
LinkDB
All DBs
Position
24:8285705..8303016
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AA seq
510 aa
AA seq
DB search
MQSVFSSRMSEFNEEPRFTIEQIDLLQRLRRSGMNKQEILHALETLDRLDREHGDKFGRR
TSSSSSSSSCYGVGGANNCTNNSASNTTTSLNNNNTASATTTSSVTCNGNTSGEGDRSAP
AASSTTSKISTATQTQFGSAGGHSPSPSNSYNTSPPPGPPPPSAILPSPVSLVAHTQNGR
DSLAATPNGKLSPPRYPVNSAAAARAFGFEATEEDLDIDDKVEELMRRDSSMVKEEIKAF
LGNRRISQAVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYTLEKTTPGATLNMRP
APLPLEDMEWRQTPPPISTAPGTFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEI
ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGG
HSNSDDVDGNDLSEQAFDLPYFDKRPLSRPFGLYRLEPTSPTQEDGAAHIEHQDPISLAV
EMAAVNHTILALSRTGGVPNDIKTESLEDE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgtatttagcagcaggatgtctgagttcaacgaggagccgcgcttcaccatt
gagcagatagatctgctgcagcggctgcgtcgctccggcatgaacaagcaggagatcctg
cacgcgctcgaaactctggaccggctggaccgggagcatggcgacaagtttggccgccgc
acctcttcctcctcctcttcctcgtcctgctacggagtaggtggggccaacaactgcacc
aacaactctgcctccaacacaactacatcactcaacaataacaacactgcctctgcaacc
accacctcttccgtgacatgcaacggtaacaccagcggcgagggcgatcgctctgccccc
gccgcgtcttccaccacctccaaaatctccaccgccacgcagacgcagttcggcagcgca
ggggggcactctccgtctcctagcaacagttacaacacctccccgcctccgggaccaccg
ccgccttctgccatcttgccatcaccggtttcgctggtggctcatacgcagaacggcagg
gatagcctagccgccacacccaacgggaagctgtctcctcccagatacccagtgaacagc
gcggccgcagcacgagcattcgggttcgaagctacagaagaagacctggacattgacgac
aaggtggaggagctgatgaggagggacagcagcatggtgaaggaggagatcaaagcgttc
ctggggaacaggaggatctctcaggcagtggtggcacaagttaccggcatcagccagagc
aggatctcccattggctgctgcagcacggctccgacctgagcgagcagaagaagagggcc
ttctaccgctggtacacgctggagaaaaccactccaggtgccactctgaacatgcggcct
gctcccttacctctggaggatatggagtggaggcagaccccaccccccatcagcacagcc
cccggaaccttccgcctgcgcagaggaagccgcttcacctggaggaaagagtgcctggcc
gtgatggagagctacttcaacgacaaccagtacccggatgaggctaagcgggaggagata
gcaaacgcctgcaatgctgtcattcagaagccagggaagaagctgtctgatctggagagg
gtcacctccctgaaagtttacaactggttcgccaaccgccgcaaagagatcaagaggcgg
gccaacatcgaagccacaatcctggagagtcatggaatagacgtccagagtccggggggg
cactccaacagcgacgacgtcgacgggaacgacttatcagagcaggcatttgacctgccc
tattttgacaagagacctctcagccgaccttttggcctttaccgcctggagcccacctcg
ccaacacaggaggacggcgcggcgcacatcgagcaccaggaccccatctctctggctgtg
gagatggctgctgtcaaccacaccatcctggccctgtccagaaccgggggggtcccaaac
gacatcaagacggagtccctggaggacgaatga
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