Pseudochaenichthys georgianus (South Georgia icefish): 117440738
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Entry
117440738 CDS
T09629
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117440738 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117440738 (supt5h)
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117440738 (supt5h)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117440738 (supt5h)
RNA polymerase I system
117440738 (supt5h)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
117440738 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW5_SPT5
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
KOW
GPKOW_C
DUF3912
SH3_KIN17_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
117440738
NCBI-ProteinID:
XP_033932855
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
LKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMHGKVMTV
KHQSVNRRKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLV
ENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRITSPMHHGGGSSPQRGGGGGGG
GGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQ
RLTTMGAKRHSGQTSTHGRTPMYGSQTPMYGTGSRTPMYGSQTPVQEAGSRTPHYGSQTP
LHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFGYDDEPSPSPQGYTGTPNPQTPGYPEVPS
PQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSP
ASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSNIEQGGSDWVTPDILVK
IKDSFMDLMGQSGVIRSVTGGMCSVFMQESEKVVSISSDHLEPVTPTKNNKVKVILGEDR
EATGILLSIDGDDGIVRMELDDQLKILNLRFLGRLEH
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtgttacccagagacctgcagctctgctcggagacggcttccggggtggatgcg
ggggggcagcacgagtggggggagctggtgcagctcgaccctcagacggtcggggtcatc
gtccgcctggagagggagacgttccaggtgctgaacatgcacgggaaggtgatgacggtg
aagcatcagtcggtgaaccgcaggaaggacaaccgcttcgccgtggcgctggactcggag
cagaacaacatccacgtcaaggacatcgtcaaggtcatcgacggcccacactcgggtcgc
gagggggagatccgtcatctgttcagagggttcgccttcctccactgtaagaagctggtg
gagaacggaggcatgttcgtctgcaagacccgacacctggtgctggccggagggtcaaag
ccccgagacgtgaccaacttcacggtgggagggttcgctcccatgagtcctcgcatcacc
agccccatgcaccacgggggaggaagttctccacagagaggaggaggtggggggggagga
ggaggaggaggaggaatggggcggggccgaggacgaagagacaacgatctgattggtcaa
accgtccgcatctcgcagggtccttacaaaggatacattggggtggtgaaggacgccaca
gagtccacggcgcgtgttgagctgcactcgacctgtcagaccatctcagtggatcgacag
cgcctcaccaccatgggggctaagaggcacagcgggcagacctcgactcacggccgcacc
ccgatgtacggttcccagactccgatgtacgggacgggatccagaacgcccatgtacggc
tctcagacgcccgtacaggaagctggaagccgcacgcctcactacggctctcaaacccca
ttgcatgatgggagcaggacgccgggccagagcggagcctgggaccccagcaaccccaac
acaccctccaggaatgacgaggagtatgactttgggtacgacgacgaaccgtccccctcc
cctcagggttacaccgggacccccaacccccagacccccgggtacccagaggtcccctct
cctcaggttaaccctcagtacaaccctcagacgccgggcacgcctgctatgtacaacacg
gagcagtactctccgtacgccgccccctcccctcagggctcctaccagcccagcccctcc
cctcagagctaccaccaggtggcgccctctccggtgggataccagaacacgcattccccc
gccagctaccaccccacaccctcccccatggcgtaccaggccagtcccagtcccagcccg
gtggggtacagtccgatgacccccggagccccctcccccggagggtacaaccctcacacg
cccgggtccaacatcgagcagggcggcagcgactgggtcacgcccgacatcttagtgaag
atcaaagactccttcatggacctgatggggcagagcggagtcatccggagcgtcacgggt
gggatgtgctcggtgttcatgcaggagtcagagaaggtggtcagcatcagcagcgatcac
ctggagcccgtcacgcccaccaagaacaacaaggtgaaggtgatcctgggcgaggacaga
gaggccacggggatcctgctcagtatcgacggagacgacggcatcgtgcggatggagctg
gacgaccagctgaagatcctcaacctgcgcttcctgggccgcctggagcactga
DBGET
integrated database retrieval system
