Pseudochaenichthys georgianus (South Georgia icefish): 117440960
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Entry
117440960 CDS
T09629
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117440960 (chd9)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117440960 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
Mitofilin
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
117440960
NCBI-ProteinID:
XP_033933049
LinkDB
All DBs
Position
3:48404622..48487964
Genome browser
AA seq
2995 aa
AA seq
DB search
MDFFNDPSLFVGGLEGLEENDFPSAPSLVDELNLTADFEPLQVEPLDPVKHQDMMPPVTT
QQVMPAYSQHMGHYIGIKAQNPMSQAFSGSGATGNGGGGGGGMIADPHGQYHNAARSQVP
QSNGLFCISSSPMWSNQDQNGKMYHPLTQQQQQLCHQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQLHNQQLHVRQQQTQQQQHHPCHQQQEQQQHRMQQQQLQQQQQQQQQQSHQQQLLNQ
HQHINTHAMSLQQQHFPFHQGGQSQSQQQVHHAQQQAQHQTAVGGPRFHPRAMPSKSYME
GQNASLSGTCLQPQQLQESYQFTRGGLGPEDPNLPFPMHSSSRVQSLPTAYQAAQYPAYP
GEPDIPSLSQQSLATTTPPASLSTTVPELSGTVCPFPSTAVMRTPVSLAEECPFRALRCS
GETQGNCGSSEMFGESMICYPSLASQLPSEQPQSCGAINTNGYQALGDNLLPPQAQDGDL
EGLEPPDLLPDLLPQLEAALSQQDESNQSWADSSQERGRKHKKPHVEYEEEKPRKNANGP
GSQVRVLSPPMKSSSSSSSSSSSSSPSSSSSSEKRTSRRTLAQMELGTPDKQEKANRIIS
EAIAKARQRGEKNIPRVLSPESFPSSSSQHKHRKREHKGNGKARAKDKACRKARIITSSK
NKQKAKIGKIVIKIGKKKKQKQASSAESDDDPPPRHSSKDDDSKRRSNRQVKRKKYSEEL
EARLSDDEVKVIGKAKKTSSGGSKQPAVQLFVENPSEEDAAVVDKIMSSRIVKKEVSPGV
VVEDEEYFVKYKNYSYLHCEWATEQQLEKDKRIPQKIKRFKLKQAQRALFFADREEDPFN
PDYIEVDRVLDVSYCEDKDTGEEVVYYLVKWSSLAYEDSTWELKDDVEQGKIEEFEQLQA
VKPDSRRTERPPANLWKKRDQSREYRNGNGLRDYQLEGVNWLLFNWYNRRNCILADEMGL
GKTIQSITFLEEICRVGIKGPFLIIAPLSTIANWEREFRTWTYLNVIVYHGSMVSRQMLQ
QYEMYFRDAQGRVLRGAYKFQAVITTFEMILGGCPILNAIDWRCVIIDEAHRLKNKNCKL
LEGFKLMNLEHKALLTGTPLQNTVEELFSLLHFLEPARFPSEVPFMQEFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAGQAN
MPNLVNTMMELRKCCNHPYLIKGAEEKIMEDFREVYSPNAFDFHLQAMVQSAGKLVLIDK
LLPKMKAGGHRVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSKPDS
ERFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITR
NSYEREMFDRASLKLGLDKAVLQSMSGRDNSVGGATGGAAPPQQQLSKKEIEDLLRRGAY
GAIMDDEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPN
FWDKWAQKADVDMEMANGRNSLVIDTPRVRKQTRPFSATKDELAELSEGNSDSDDSKPKL
RRNHDRLNSYGRTECFRVEKNLLVYGWGRWKDILTHGRFKKQLTERDVESICRALLSYCL
VHYRGDDKIKSFMWDLIAPSEDGQTKELQNHLGLSAPVPRGRKGKKMKIQSSAFDIHKAE
WLRKHNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQRVLDGVDSSDIKI
WVPDPDHSELPALWWDAIADKCLLLGVYKHGYEKYNTLRADPTLCYLERVGRPDEKAIAA
EQRGNDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDLVVVDNAGDAVPLTGSQTSYWPS
PSVLTARLRRLITASQRFTKSRQILQIHQTQTPSPSSMMLSAPLCPLPPTINDTLNPKMV
AKIERQQRWTRREEADFYRVVSTFGVVFDPSLGRFDWNKFRAMARLHKKTDESLQKYLCA
FAAMCRRVCRLPPKEGDAAVEPSLNIQPITEERASRTLYRVELLRQVREQVLRHELFYER
LLLCQMSSDLPVWWEAGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQTKTA
QQHSHAPTPLLQPQCQPSSSMLTGSPLPLLPPLPPPTHTDAELGGVVPKVEPASEGEEGR
EEGREKQAERWSPTRAPATPTGLEEKPLFEMIGGEMQLVAARTKPLTPNSSERKPKKAKR
RRREAKRGSESDSGGSSSSSSSRSSSTSSSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSS
SSSSNGSDSEGEEGKKKVPAAAMEKGFDEDSVASLTMALDETQEPHTAENGITNNSSHPF
QGGGYMLAASYWPKDRVIINRLDSICQAVLKGKWPGTRRVYEPGAVASFYTTKLLDNANS
LCEDPSASPQGSKVTKHVAENKEFSVKLNDQEGGLKLTFQKQGLPLKRPLESEEGPQAQQ
QYLARLQELQSASDTGLADITKPQCSFQSVPPGLPAQVRLNGALDGQPVVKRRRGRRKNV
EGMDLLFMNRNRAPAVPDQVPPGWGGIGQVAMAVAPVPGYSQSSSQAPADTDSRVPVINL
KDGTRLAGEDAPRRKDLEQWLMEHPGFVADTGAYIPGVNKMQMQFHFQDGRPKQKRHRCR
NPNKIDVNSLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQ
SGYLPESMFDRILTGPIVPEEVSRRGRRPKNPLAKAAAAAAAAAAASAPNPAAMGLNPLL
ANGLLSGLDLSSLQAFQQNLQSLQSLQLTAGLMGLPTDASNLAASNLAAMFPMMLSGMAG
LPNLIGMSSLLGKPAQEGAGGLEEKTKGSGAAGEPSASKASEPRGERTEGSNSTSSSSST
APLSASAASSLSLNPLLLSSMLYPGMLLTPGLNPPTQPQSSNSGPPLPPAGSSQEIARLA
AQRDAEEDDEALEDDDEDDSAEQKENSGPDGSGKAESSSSESGSSSSSDDSDSSD
NT seq
8988 nt
NT seq
+upstream
nt +downstream
nt
atggacttcttcaatgaccccagcctctttgttggaggtttggaagggctggaggagaat
gacttcccctcagctccatcacttgtggatgagctaaatctcaccgctgactttgagccc
ctccaagtggagcctctagacccagtgaagcaccaggacatgatgccaccagttactacc
caacaagtcatgcccgcgtacagtcagcacatgggtcattacattggcattaaagcacag
aatccaatgagtcaagcattttctggttctggggccacaggtaacggtggaggaggtggc
ggcggcatgattgcagacccacatggccagtatcacaatgctgccagaagccaagtacct
caatctaatgggctgttctgtatcagcagcagtcccatgtggagcaaccaagaccagaat
ggaaaaatgtaccacccattaactcaacagcagcaacagctttgtcatcagcagcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
caacagcagcaactgcacaaccagcaactccatgtcagacaacaacaaacacagcagcag
caacaccacccatgtcatcaacaacaggagcaacagcagcacagaatgcagcagcaacag
ctgcaacaacaacaacaacaacaacaacagcaaagtcatcagcaacagctgttgaaccag
caccaacacatcaacacccatgcaatgtccctacagcagcaacattttccttttcaccaa
ggaggtcaatctcaaagtcagcagcaggtgcaccatgcccagcagcaggctcagcaccaa
actgctgtgggaggaccaaggtttcatccaagggctatgccaagtaagtcttacatggag
ggtcaaaacgcttctctgagtggaacttgcttgcaacctcagcagctgcaggaaagctac
caatttacaaggggaggcctaggaccagaagaccctaacctgccattccccatgcattca
tcatccagggttcagtccctgcccactgcttaccaggctgctcagtaccctgcctaccct
ggagagccagacatacccagtctcagtcagcagtctttggccaccaccaccccccctgcc
tccctctctactacagtgcctgagctctcagggacagtatgtccattcccatcaactgca
gttatgaggacccctgtaagcctggcagaggaatgtcctttccgggccttacggtgctct
ggagaaacccagggaaactgcgggtcatctgagatgtttggcgagtctatgatctgctac
cctagcctggccagccagctgccctctgagcagcctcagagctgcggggccatcaacact
aatggatatcaagccttgggtgacaatctcctgccaccacaggctcaggatggagacttg
gagggccttgagcctcctgacctgctccctgacctattgccccagctggaggcggcccta
agccaacaggatgagtccaaccagtcctgggccgattccagccaggagaggggacgtaag
cacaagaaaccacatgttgagtacgaggaagaaaagcctcgaaagaacgctaatggtccc
ggcagccaggtacgggtcctcagtcccccaatgaagagcagctcatcgtcctcctcctct
tcctcgtcgtcttcgccctcgtctagctcctcgtcggagaagaggacgtcgcggaggacg
cttgctcagatggagttgggtacaccggacaaacaggagaaggccaataggataatatca
gaggctattgctaaggcccggcagcgcggggagaagaacattcccagagttctgagcccc
gagagcttccccagctcttcctcgcagcacaagcaccgcaagcgcgagcacaaaggaaac
ggcaaggcgcgggctaaagataaggcctgtaggaaggcccgaatcataacctcctcaaag
aacaaacagaaggccaagatcgggaaaattgtcatcaagattgggaagaagaaaaaacaa
aagcaggcgtcgtcagcggagtcagacgatgaccctccccctcgacactcttctaaggat
gacgactctaagaggagatcaaatcggcaggtgaagagaaagaagtactctgaagagctg
gaggcccggctgtcagatgacgaggtcaaggttattgggaaagccaagaaaacgagctct
ggaggctccaagcagccggctgtgcagctctttgtggagaaccccagtgaagaggacgct
gcagttgttgacaaaatcatgtcttctcgtatcgtgaagaaggaggtttctccaggagtg
gtggtcgaagacgaggagtattttgtaaaatacaaaaactactcctacctacactgtgag
tgggccacagagcagcagctggagaaggacaagaggattccgcagaagatcaaacgtttc
aagctgaagcaagcacagagggcactcttcttcgcagacagggaagaggacccctttaac
ccggactatatagaggtagaccgagtgctggatgtgtcgtattgtgaggacaaagacaca
ggagaggaggtggtgtactacctggtgaagtggagctctctggcttatgaagacagcacc
tgggagctgaaggacgacgtggaacagggcaagatagaagagtttgagcagctgcaggca
gtgaagccagactctcgcaggacggagcgtcccccggccaatctgtggaagaagagggat
cagtcgagggaatacaggaatggcaacggcctcagggactaccagctagagggggtcaac
tggctcctcttcaactggtacaacagacggaactgcatcctggccgacgagatgggcctg
ggaaagaccatccagtccatcacattcctggaggagatctgccgtgtgggcattaaaggg
ccattcctcatcatcgctccgctctccaccatcgctaactgggagcgcgagtttcgtact
tggacctatctcaacgtcatcgtttaccacgggagcatggtcagcaggcagatgctgcag
cagtacgagatgtatttcagggacgcacagggccgtgtgctgcgaggggcctacaagttc
caggcggtgatcaccacgttcgagatgatcctgggaggctgtcccattctcaacgccata
gactggcgctgtgttatcatcgacgaagcccaccgcctcaagaacaagaactgcaagctg
ctcgagggcttcaagctcatgaacctggagcacaaagccctgctgaccggtactcctctc
cagaacactgtggaagaacttttcagcctgctccacttcctggagccggcacgcttcccc
tcagaagtccctttcatgcaggagtttggagacctgaagacggaagagcaggtccagaag
ctgcaggccatcctgaagcccatgatgctgcgccggctgaaggaggacgtggagaagaag
ctggctccgaaagaggaaaccatcatcgaggtggagctcaccaacattcagaagaaatac
taccgcgctatcctggagaagaacttcaccttcctggctaaaggagccggccaggccaat
atgcccaacctggtgaacaccatgatggagctgagaaagtgctgcaaccacccctacctc
atcaaaggggcagaagagaagatcatggaggacttcagggaggtgtacagccccaatgcc
ttcgacttccacctgcaggcgatggtacagtctgccgggaagctggtcctcatcgacaaa
ctgctgcccaagatgaaggccgggggccacagggtgctcatcttctctcagatggtgcgc
tgcctggacatcttggaagactacctcattcagagaaggtacttgtacgagcgtatagat
gggcgtgttcgtggaaacatgcgtcaggccgctatcgaccgcttcagtaagcccgactcg
gagcgcttcgttttccttctgtgcacacgcgctggtggcctgggaatcaacctcactgca
gcagacacctgcatcatctttgactcagactggaacccgcagaacgacctgcaggcccag
gctcgctgccaccggattggccagaacaaggcagtgaaggtgtaccgtctgatcaccagg
aactcgtacgagcgggagatgtttgatcgcgccagcctcaagctgggcctggacaaagcg
gtgctgcagagcatgagtggccgagataacagcgtgggaggagccaccgggggggcggcc
cctccgcagcagcagctgtctaagaaggagatcgaggatctgttgcgacggggggcttac
ggcgccatcatggacgatgaggatgaaggggccaaattctgtgaggaggacatcgatcag
atcctccagcgccgcaccaagaccatcaccatcgagtctgagggccgaggatccaccttt
gctaaggccagttttgtggcgtctggaaaccgcacagacatatctctggatgaccccaac
ttctgggacaaatgggcccaaaaggctgacgttgatatggaaatggctaacggcagaaac
agcctggtgatcgacactcctcgcgtcagaaagcagacgaggccgttcagcgccaccaag
gatgagctggccgagctctcggagggcaacagcgacagtgacgactccaaacctaaactc
aggagaaaccacgaccgcctcaacagctacgggcgcacagagtgcttcagagtggagaag
aacctgctagtttatgggtggggtcgttggaaagatattctgacccacggtcgttttaag
aagcagctgacggagagggatgtggagtccatctgcagggccctgctgtcttactgcctg
gtacattaccgtggagatgacaaaatcaaaagcttcatgtgggacctgatcgctccgtct
gaggacggacaaaccaaggagctgcagaaccacctgggtctgtctgctccagtcccgcgg
ggcaggaaggggaagaagatgaagatccagtccagcgcttttgacatccacaaagccgag
tggctcaggaaacacaacccagagcacatgctgcaggacgacggctacaagaagcacctc
aaacaccactgcaacaaggtgctgctcagggtcagaatgctctactacctgaaacaggag
gtgataggaagccaggcccagagggttttagacggcgtggactccagtgatataaagatc
tgggtgccagaccctgaccactcagagctgccggccttgtggtgggacgccatcgctgac
aagtgtctgctgctgggtgtctataagcatggttatgagaagtacaacactctgcgtgcg
gaccccactctgtgttacctagagcgtgtgggacgtccggatgagaaggccatcgctgcc
gaacagagaggcaacgacttcatggacggggatgtggatgacccagagtacaagcctgcc
cccgccctgctgaaggacgacatggaggatgacgcctcttctcctggagatctcgttgtt
gttgacaatgccggagatgcagttccattgactggaagtcagacttcctactggccttcc
ccctcagtgctgactgccaggctgaggcggctgatcacggcctctcagcgcttcaccaag
agccggcagatcctccagatccaccagacgcagactccgtctccctcctccatgatgctg
tccgctcccctctgcccgctgccccccaccatcaacgacaccctcaaccccaagatggtc
gctaagattgaacggcaacaaagatggacgaggcgagaagaggctgacttctaccgcgtg
gtctctacttttggagtcgttttcgacccgagcctcggccggtttgactggaacaagttc
agagccatggctcggctgcacaagaagaccgacgagagcctgcagaaatacctgtgtgct
tttgccgccatgtgccggagggtgtgtcgcctgccacccaaagagggagacgctgcggtg
gagccgtccctgaacatccagcccatcacagaggagcgagcgtctcgaacgctttacagg
gtggagctgcttcgccaggtgagggagcaagtccttcgccacgagctgttctacgagcgc
ctgctgttgtgccagatgagctccgacctgcccgtctggtgggaggcaggaacccacgac
cgagacctgctcatcggggccgccaagcacggagtcagccgcacagattaccacatcctg
agggaccccgagctcagcttcatggcggcacagcgcaactacagccaaacaaagaccgct
cagcagcattcacacgcacccacccctctcctacagcctcagtgccagcccagcagctcc
atgttgacgggctctccgctgcctttgctgcctccgctacctccgccgacccacacagac
gcagagctcggtggggtcgtacccaaagtggagccggcctcagagggggaggagggcagg
gaggagggcagggagaagcaggcggagagatggagcccaactcgagcaccagcgactccc
acgggtctggaggagaagccgctgtttgagatgattggtggcgagatgcagctggtcgca
gcacgcaccaagcccctcacccccaactcctccgagaggaaacccaagaaggccaagagg
cgccgcagggaggccaagaggggctctgagtccgactcaggcggctcctcctccagctct
tcgtcacgctcctcttccacctcctcatcctcctcttcttcctcgtcacattccgggtcc
agctcctcgtcctcttcgtcttcttgctcctctggttcctcgtcatcatcgtcctcctcc
tcgtcttcttccaatggcagcgacagtgagggagaggaagggaagaagaaagtgcctgca
gcagcaatggagaagggctttgacgaggacagcgtggcgtctctgaccatggcgctggat
gaaacccaggaacctcacacggctgagaacggcatcaccaacaactcctcacatcccttc
cagggaggagggtacatgctcgctgcatcctactggccaaaggatcgtgtgatcatcaac
cgcctggacagcatctgccaggcggtgctgaagggcaagtggccgggaacgcgtcgggtg
tacgagcccggtgccgtggcctccttctacacaaccaagctgctggacaatgccaacagt
ctgtgcgaggacccctccgcttctccacaggggtcaaaggtgaccaagcatgttgcagaa
aacaaggagttctcagtaaaactcaacgatcaggagggaggtctgaagttgaccttccag
aaacaaggtctacctctgaagcggcccctggagtcggaggaggggccccaggcgcagcag
cagtacctggcccggcttcaggagctgcagagcgcctcggacaccggcctggccgacatc
accaagcctcagtgcagcttccagagcgttcctccaggtctccctgctcaggtgaggctg
aacggagcactggacggccagccggtggtgaagaggcggagggggaggaggaagaacgtg
gaggggatggacctgctcttcatgaacaggaacagagcccctgctgttcctgatcaggtg
cctccagggtgggggggtattggtcaggtggccatggctgtggccccggtgccgggctac
agccagagctccagtcaggcgcccgcagacactgacagccgggtgcccgtcatcaacctc
aaagacggcacccggctggcaggggaggacgccccccggaggaaagacctggaacagtgg
ctgatggagcaccctggctttgtggcagacacaggagcctacatccctggggtgaataag
atgcaaatgcagttccacttccaggacggtcggcccaaacagaagaggcaccgctgcagg
aacccaaacaagatcgatgtgaacagcctgaccggagaggagagggtccagatcatcaac
aggaggaatgcacgcaaggtcggtggagcgtttgctcctcctctgaaggatctgtgtcgg
ttccttcaggagaaccccgagtacggagtcccacctgaatgggctgatgtcgtcaaacag
tcgggttacctcccagagagcatgtttgacaggatcctgacgggacccatcgttcctgag
gaggtgagccggcgtggacgtcgacccaagaaccctctggccaaggcagcggcggcggca
gcagcagcagcagcagcttcagcccccaaccccgctgccatgggcctgaaccccctgctg
gccaatgggctgctctctgggctggacctcagcagcctgcaggccttccagcagaacctg
cagagcctccagagcctgcagctcaccgccggcctcatggggctgccgaccgacgccagc
aacctggccgccagtaacctagccgccatgtttcccatgatgctctctggtatggccgga
ttgcctaacctgattggcatgagcagcctgctggggaagccggctcaggagggcgcagga
ggcttggaggagaagacaaagggaagcggtgcagcaggagaaccgtctgcctcgaaagcc
tcagagcccagaggagaaaggacagagggctcaaactccacttccagctcctcttccacc
gccccactaagtgcttcagctgcctcttcactgtctctcaaccccttgttactctccagt
atgctttacccagggatgcttctcactccaggccttaacccccccacacagccgcagagc
tctaactctggccccccccttcctcctgcaggctcttcgcaggagatcgctcggctagca
gcacagagggacgcagaggaggatgacgaggcattagaagacgatgacgaagatgactca
gcagaacagaaggagaacagtggtcctgacggttcggggaaagctgagtcatcttcctcg
gagtctgggagctcctcttcatcggatgattcagactccagtgattag
DBGET
integrated database retrieval system
