Pseudochaenichthys georgianus (South Georgia icefish): 117441556
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Entry
117441556 CDS
T09629
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03008
Ribosome biogenesis in eukaryotes
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117441556 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
117441556 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117441556 (xrn2)
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117441556 (xrn2)
03009 Ribosome biogenesis [BR:
pgeo03009
]
117441556 (xrn2)
03016 Transfer RNA biogenesis [BR:
pgeo03016
]
117441556 (xrn2)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117441556 (xrn2)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117441556 (xrn2)
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Pre-60S particles
RNases
117441556 (xrn2)
Transfer RNA biogenesis [BR:
pgeo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
117441556 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
117441556
NCBI-ProteinID:
XP_033933515
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MGVPAFFRWLSRKYASIVVHCVEEKGKECNGVCIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELVEEKTRIREEVIGKGGYLPPDEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RISNDPGWKNVTVILSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQVGHEIKECQGVAREKQGEHDEFAGSMPGSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVTIYKDVVHKTGGYVTHNGYVDLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KKKRMKNERGPAHLTSGQFSPQALGRRDKPDAVNNARHQAFDMRMQSNKDAAQSLKASMK
NGGNSAGASGSTDGRGVKRKANDSDSEPEPEDDVRLWEDGWRQRYYKTKFDVEATDDDFR
QKVVRSYVEGLCWVLRYYYQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagccgaaaatatgcttcaatcgttgtgcat
tgtgttgaggagaaggggaaagaatgtaacggcgtctgcattcccgttgatacgacaaag
cctaaccccaacgaggtggaatttgacaatttgtacttggacatgaacgggatcattcac
ccctgcacacatccagaggacaaagctgccccaaaaaatgaagacgagatgatggtcgcc
atttttgagtacatcgaccgcctgttcaatatcgtgcggcccaggagagttctctacatg
gccatcgatggagtggctccacgtgccaagatgaaccagcagcgctctcgccgtttccga
gcctccaaagaaggagcagagctggtggaggagaagactcgcatccgagaggaggtcatc
gggaaaggaggttatcttccacctgacgagattaaagagagatttgacagcaactgcatc
actccagggacagagttcatggataacttggctcagtgtctgagatattacgtcgcagag
agaatcagcaatgatccgggctggaagaacgtcacggtgattctgtccgatgccagcgtt
cccggggaaggtgaacacaagatcatggactacatccggagacagagagctcaacccaac
cacgacccaaacacacaccactgcctgtgtggagccgacgctgatctgatcatgctgggc
ctggcgacccacgagcccaacttcaccatcatcagagaggagttcaaacccaacaagccg
agaccctgcgccctctgcaaccaggtcggacacgaaatcaaagagtgccagggcgtggct
cgagagaagcagggagagcacgatgaatttgccggttcgatgccggggtccgagcaggag
ttcatcttcatccgactctgcgtgctgcgagagtatttggctcgagagctcacgatggcc
agtctgccgtttcccttcgacttcgagcggagcatcgacgactgggtcttcatgtgcttc
ttcgtgggaaacgacttcctgcctcacctgccgtccttagagatcagagagggagcgatc
gatcgactcgtcaccatctacaaagacgttgtgcacaaaactggaggatacgttacacac
aacggctatgtggatctggagcgagtggagctgatcatgcaggcggtcggcgtcgcagag
gacaatatcttcaagaaacgcaaagaggacgacgaaggcttcaagagaagaatgaaagag
aagaagaagaggatgaagaacgagcgggggccggcccacctgacctcgggtcagttctct
cctcaggctctggggaggagagacaaacccgacgccgtgaacaacgcccggcaccaggcc
ttcgacatgaggatgcaatccaacaaggatgccgctcagtcccttaaggcctcgatgaag
aacggtggcaattctgcaggggcgagcggcagcaccgacggccgcggggtcaagaggaaa
gctaacgacagcgatagcgagccggagcctgaagacgacgtcaggttgtgggaggacggc
tggaggcagaggtactacaagacgaagtttgacgtggaggcgacggacgacgacttcagg
cagaaggtggtgcggtcgtacgtggagggactctgctgggtgctgagatactactaccag
DBGET
integrated database retrieval system
