Pseudochaenichthys georgianus (South Georgia icefish): 117442086
Help
Entry
117442086 CDS
T09629
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117442086
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117442086
04091 Lectins [BR:
pgeo04091
]
117442086
Proteoglycans [BR:
pgeo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
117442086
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
117442086
Lectins [BR:
pgeo04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
117442086
BRITE hierarchy
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_3
I-set
Motif
Other DBs
NCBI-GeneID:
117442086
NCBI-ProteinID:
XP_033933981
EnsemblRapid:
ENSPGEG00000015030
LinkDB
All DBs
Position
3:17091953..17107910
Genome browser
AA seq
1525 aa
AA seq
DB search
MIRWIVLLSVSLHVISAAFDYISTDPEDVLSVSIPLEEPQRPLLGATLVLPCYFEDHTVP
DPGAPSIAPLAHRIKWSHVTKEKVTTILVALEGQVLISESYLDRVHLVGYPMTSTDVSIK
ISELRSSDTGVYRCEVQHGIEDSHDIVHVQVQGMVFHYRAIIGRYSLTFEKAKAVCMQNS
AVMASPEQLQAAYDDGFHQCDAGWLSDQTVRYPIQDPRVNCYGDKEELPGVRTYGVRDLN
ETYDVYCFTEKMTGRVFYTAAAEKFNFSEAEFACSSQGAQLATTGQLYLAWQGGMDVCNA
GWLADRSVRYPINIRRLQCGGGLLGVRTVHLYTNQTGYPLPESRYDAFCYTESTDEEGSG
IIEEGSGLLSVTTVTLSPEVFFRRTTTESEAVGEVETQQPTQVDFTESPIQLPLPQPPNV
TELVVDLIEPATARPDTRREPGKGFVMPPTGVVFHYRSGSSHYAFTFVEAQLACQSVGAS
IATPKQLQAAYKAGYHQCDAGWLLDQTVRYPIVFPREKCDGDLGELPGVRSYGLRPGDER
YDVYCYIDGIKGEVFHVGSAEGLTYDEASSSCQEQNAVLASPGELYAAWKMGFDKCRAGW
LVDRSIRYPINKPRNGCGGGKPGVHTVHAHPDQIGSPELDARFDAYCFRADFLLIANETG
LNITDIEAALLNLTSITDLLKPAVPSIVAPITVEISGSGSGSADFGSGSAVDGASGGHSG
DLSGSGDLSGSGDHVTSGESSSSGAFSGFGRLSGSGDLSGSGDLSGSGHLSGSGDLSGSV
DLSSSGDLSGSEHLSGSGDLSGSEHLSGSGDLSGSEHLSSSGDLSSSGDLSVSGDLSGSE
DLSGSGDLFGSGHLSGSGDLFGSGHLSGSAELPSGESGFNSADASGSALSGEGSGITVVF
SGMDSIVSGDGSASGGIQEAGEGSTGIFIFPSSESGSGMLSGSGDLSGSGFSSAESGSSI
DSSGESGQFSGMFSGFITGQDFSGFRGFPSGFSSGSASGHPGELSGSGDSQILLIDGQLI
DTSISTTNKEYELGGGLLAFSGSGDISGSGIISGDLSGSASGSGSGFFSSGVTFIGSGFT
DLTVSSSGEQEASGLLVYSSGQGSGGHLSGFGSSSFISGSGSGMSGSESSTSGEESSVTF
LSGDFTSEVSRDTTLSMELGDGSVEYSGEGSSSSSGLSSGTGDNHLSTASGSSSGSSSGD
LPMVVPPSPSSNWALTESTIGPEEVHGLVEPTQIPVDVYGTPYSVLAPAGLAAPPTAASP
TSVQTPGFVKGTDSLEEVDVCHPNPCANGATCVESAASYKCLCLPSYGGERCEIDEQQCE
DRWTKFQGNCYRHFSDRKLWLDAEQQCRDMNAHLASIITPEEQDFVNSNGQNYQWIGLND
KTVANDFRWTDGTPLQYENWKLNQPDNYFNSGEDCVVMIWHQNGQWNDVPCNYRLPFTCK
KGPVSCGAPPEVENSHMFGNKREEYPVNSIIRYQCNPGFLQRHPPVVRCKADGQWEEPQV
ECTDVKARKRTQPSTNRMAAGGKLH
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atgatacggtggattgtgttgctgtctgtgagtctacatgtcatctcagcagcatttgat
tacatttccacagacccagaggatgtgctgagcgtgagcattcctctggaggagccacag
cgtcctctactgggagcaacgttggtgctaccgtgttactttgaggaccacactgtccca
gacccaggagctccctccatcgcaccgctcgctcatcgaatcaaatggagccacgtcact
aaagaaaaagtcacgactatcttagtggccttggaaggacaggtgctaatcagtgagagc
tacctggacagagttcatctggtgggctaccccatgacttctacagatgttagcatcaag
atatctgagctgcggtccagtgacacaggagtctaccgctgtgaggttcagcacggcatc
gaggacagccacgacatcgtccatgtgcaggttcaaggtatggtgttccactaccgagcc
atcattggccgctacagtttgacttttgaaaaggctaaggcagtttgcatgcagaacagt
gcggtcatggcttcacctgaacagcttcaagcagcctacgatgatggcttccaccagtgt
gacgctggctggctctccgaccagaccgtcaggtacccgatccaagatcctcgtgtgaac
tgctatggtgacaaagaggagctgcctggggtcaggacatacggagtgagagacctcaat
gagacttatgatgtctactgcttcactgagaagatgacagggagagttttctacactgct
gctgcagaaaagttcaacttctctgaggctgagtttgcatgctccagtcagggagctcag
ttggccactactggtcagctgtacctggcctggcagggtgggatggatgtctgtaatgcc
ggctggctggcagacaggagcgtccgctaccctattaacatccgtcggctgcagtgtgga
gggggtctgttgggggtgcgaactgtgcacctctacacaaaccagacaggatacccactt
cccgagtctcgctacgatgcgttctgctacacagagtccactgatgaggaaggttcaggc
atcatagaagaaggaagtggtttgctgagtgttactacggtgacactgagcccagaggtg
ttcttcaggaggacaaccacagagagtgaggcggttggagaggtggagactcagcagcct
acccaagtggacttcacagagagccctatccagctgccgctacctcagccaccaaatgtc
actgagttggtggttgacctgatagagccggccactgcccgacccgacacacgtagggaa
cccggcaaaggctttgtgatgcctcctactggtgtggtgttccattatcgttcaggctcc
agccactacgctttcaccttcgttgaggcccagctggcctgccaaagtgttggagcctcc
atagccacgccaaagcagctgcaggcagcatacaaggctggatatcaccagtgtgatgct
ggatggttactggaccagactgtaaggtatcccattgttttccctcgagaaaagtgtgat
ggagatctaggggaactacctggagttcggtcatatggtttaaggccaggagacgagaga
tatgatgtgtactgttacattgatggtatcaagggggaggttttccatgtgggttccgct
gagggtctcacctatgatgaagcttcttctagctgtcaagagcagaacgcagtactagcc
tcccctggagagctgtacgcagcctggaaaatgggttttgacaagtgtcgcgctggctgg
ctagtggatcgcagcattcgttatcccatcaacaaaccccgtaatgggtgtgggggtggg
aaaccaggagtacacactgttcacgctcaccccgaccagataggctcccctgaacttgat
gccagatttgatgcatactgttttagagcagattttctactaattgcaaatgaaactgga
ctgaacatcacagatatcgaagcagccctccttaacctaacatcaattactgatttgttg
aaacctgctgttccttccattgttgctcctattactgtggagatttcgggctctggctcc
ggatctgcagactttggctcggggtctgccgttgatggtgcctctggtggtcactcagga
gatctgtctggatctggtgacctgtctggttccggtgatcatgttacctctggagaatcg
tctagttctggagcattttctggttttggacgtttgtctggttctggagacctttctggt
tctggagacttatctggatctggtcatttgtctgggtctggagacctatccggttctgta
gacctatccagttctggagacctatccggttctgaacacctatccggttctggagaccta
tccggttctgaacacctatccggttctggagacctatccggttctgaacacctatccagt
tctggagacctatccagttctggagacctatccgtttctggagacctatccggttctgaa
gacctatccggttctggagacctattcggttctggacacctatccggttctggagaccta
ttcggttctggacacctatctggcagtgccgagctgccaagtggggaatcaggtttcaac
agtgcagatgcttctgggtcagctctcagtggtgaaggatccggcatcactgtagttttt
tcaggaatggacagcattgtatctggagacggctcagcttcaggaggaatccaagaagct
ggagaaggaagcacagggatctttatattcccttcatctgaatcagggtctggaatgctc
agtggtagcggggatctgtctggatctggtttcagctctgcggagagtggctcttccata
gacagctctggggagagtggacagttttctggcatgttctccggtttcatcacaggccag
gacttttctgggtttcgtggtttcccatcaggattctcttcaggaagtgctagtggacac
ccgggagagctttcgggaagtggagactcacagatcttactaatagatggacaacttatc
gatacgtctatctctactaccaacaaggagtatgagcttggtggaggcctactggcattc
agtggctctggagacatctcagggtctgggattatcagtggggatctcagtggctccgcc
tctggaagtggctctgggttcttctcctcaggcgtgacctttattgggtcagggttcacc
gacctaacagtgtcatcctctggagagcaggaagcctctggtttattagtgtacagctct
ggacagggaagtggtggacatttgtctggatttggaagctcaagttttatctcgggttct
ggatcgggaatgtctggatctgagtcctcaacgagcggagaagaaagcagtgttacattt
ttaagtggggattttacatcagaggtatccagagacactacactgtctatggagcttgga
gacggatcagtggagtacagtggagaaggaagcagtagcagcagtggtttgtcctctggc
actggagacaaccacctatccacagccagtggctcttcttcaggatcttcctctggggat
ctgccgatggtggtgccaccctcaccatccagtaactgggcactgactgagagcaccata
gggccagaggaagtccatggtctggtggaaccaacccagatccctgtcgacgtctatgga
actccatactctgtactcgcccccgcaggactggctgcccctcctaccgcagcttcacca
acctctgtgcagacaccaggctttgtgaaaggaactgattcactggaggaggtagatgtg
tgccatcccaacccttgtgccaatggagccacctgtgtggagagtgcagcatcttacaaa
tgcttatgcctgccaagctacggaggggaaagatgtgagatcgatgagcagcagtgtgaa
gaccgttggactaagtttcaggggaactgctaccgacacttctctgacagaaagttgtgg
ctggatgcagagcagcagtgcagggacatgaacgcccacctggccagcatcatcacccca
gaggagcaggacttcgtcaactcaaatggacagaactaccagtggatcgggctgaatgac
aagaccgtagcgaatgacttccgctggacggatggcactccactgcaatacgagaattgg
aagctgaaccaacctgataattacttcaactcaggagaagactgtgtggtgatgatctgg
catcagaatggccagtggaatgacgtgccgtgcaactaccgcctgccgttcacctgcaag
aaaggccccgtgtcctgtggcgccccacctgaggtggagaattcccatatgtttggtaac
aagagggaagaataccctgtcaactccatcatccgctatcagtgcaacccagggttttta
cagcgccaccctccggtggtccgatgtaaggcagacggtcagtgggaggagccccaagtg
gaatgtactgatgttaaagccagaaaaagaacacagccgagcaccaacaggatggcagct
ggtggcaagcttcactag
DBGET
integrated database retrieval system
