Pseudochaenichthys georgianus (South Georgia icefish): 117442120
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Entry
117442120 CDS
T09629
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117442120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117442120
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117442120
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117442120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117442120
NCBI-ProteinID:
XP_033934013
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MFGANRKKFMEGGIESDYADDSSLYYTQQSMFPPHRPDKDMLTSSSASSTGQLSQLGASL
YGPQSALGFPMRGMNSSAAPQLSRSGLNQPGSQLPSHGSTANTGTMHTPPSPSRGILPMN
TRSVLNHSQQVGGPTAQSGGMGGVGVERGGGGRSSSMGSPSRSSPSIIGMPKQQQARQPF
TINSMSGFGVNRNPGYNMNSSLSNNIFNGTDGSENVTGLDLSDFPALADRSRRDGGSNPT
PLLNPLAGRAPYVVASLTTLSSMFPVGMVTKPSNEQSQDFSIHNEDFPALPGPNYQSKDP
SSTSEDSKTRSHVLTRPIFSDCFFPPFLSNQNLNSSGKPASNSDGPKFPGDKSSAPSNNN
QQKKGIQVLPDGRVTNIPIGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNL
NSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLSRYGEDLLFYLYY
MNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNAYERGTYYFFDCLNWRK
VAKEFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaaccggaagaagtttatggagggagggatagagagcgattacgcggac
gactccagtctctactacacccagcagtccatgttccctccgcaccgccccgacaaagac
atgctgacgtcttcctcggcttcctcaacgggtcaactgtcacagctaggagccagttta
tatggcccgcagagcgctctggggtttcccatgcgtgggatgaacagcagtgcagctccg
cagttaagtcgaagtggattaaaccaaccaggaagccaactcccgagccacggcagcaca
gcgaacaccggcacgatgcacacacccccctcacccagcagggggattctgccgatgaac
acccggagcgtcctgaaccacagccagcaggtcgggggtcccacggcgcagtcggggggg
atggggggtgtgggagtggagcgggggggcggcggcaggagcagcagcatgggcagtccc
agccggtcgtcacccagcatcatcgggatgcccaaacagcagcaagcacggcagcccttc
accataaacagtatgtcggggtttggtgtgaacaggaatccagggtacaacatgaacagc
tccctctccaacaacatcttcaacggcacagacggcagtgagaatgtgacagggttggat
ctgtcggacttccctgcgttagcggatcggagtcggagggacggaggctcgaatcccaca
ccgctcctcaacccgctggccggtcgggctccctacgtcgttgcgtcgctaaccacgcta
tcctccatgtttccagttggcatggtaacaaagccatccaatgagcagtctcaggatttc
tcgattcacaacgaggatttcccggctctgcccgggcccaactaccaatcaaaagacccc
agcagcaccagcgaagacagcaaaacgcgctctcacgtcctgactcgtcccattttttcg
gactgttttttccctccgtttttgtccaatcagaatctgaactcgtcgggaaagcccgcc
tccaactcagacggtccaaagttccccggagacaagagctccgcgcctagcaacaacaac
cagcagaagaaagggattcaggtgcttcctgatgggcgggtgaccaacatcccgatcggc
atggtaacggatcagtttgggatgatcggcctgctgacgttcatccgggcggcagagacc
gaccccggcatggtgcacctggctctgggctccgacctcacaacgctgggcctcaatctc
aactcaccggagaatctttatcctaagtttgcgtctccctgggcgtcggctccgtgccga
ccgcaggacatagactttcacgtcccctcagagtatttaaccaacatccacataagggac
aagttagcagctattaagttgtcgcggtatggagaagatctgctgttttacctctactac
atgaacggaggagacctactacaacttctggctgcagtagaactgtttaacagggactgg
cggtaccataaggaggagcgggtctggatcactcgggctccggggatggagcccacgctg
aagaccaacgcctacgagagagggacctactacttcttcgactgcctcaactggaggaag
gtggcgaaggagtttcacctggagtacgaaaaactagaagagcggcctcacgttccctcc
acgttcaactacaatcccgcccagcaggccttctga
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