Pseudochaenichthys georgianus (South Georgia icefish): 117443086
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Entry
117443086 CDS
T09629
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117443086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117443086
03041 Spliceosome [BR:
pgeo03041
]
117443086
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117443086
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117443086
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117443086
mRNA cycle factors
Common to processing body (P body) and stress granule
117443086
Spliceosome [BR:
pgeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117443086
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117443086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
117443086
NCBI-ProteinID:
XP_033934915
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNNVDGGEGGGTGRRYIPPHLRNSGAPRNAGNAYSAGTQY
GYSVAPVNLYSPGWDGGRSNGYVNGDHDNRSNGGYGGRGAPRNDRGVGSEGNFAAPRDAA
YNSFGGRNNDRSKSTFFNDRGSSSRGSYSRGGYSSGGGGGGNRWSDESRDEDWSKLTAPN
ERLENELFGASNTGINFEKYDDIPVEATGSNCPPHIDTFHDVDMGEIIMANIAMSRYDHP
TPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALAASKNGGQDSGR
YGRRKQYPLAMILAPTRELASQIYDEARKFAYRSRVRCCVVYGGADIGQQIRELERGCHL
VVATPGRLVDMLERGKIGLDYCSFLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTM
MFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATV
IPTDENVPEVPEKPGKESLTLVFVETKKGADALEDFLYHEGYSCTSIHGDRSQRDREEAL
AQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF
FNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTTRGRSKRFAGGFGARDYRQTP
GGGPSSFTTPRGGRSAGGGRGFGGGGGGFGGGGGGGFYGGGGGGNDGGYGGSYSNSGSGT
DWWGN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagctggctggactagac
ttgaacaacgttgacggcggagaaggcgggggaactggcaggcgttacattccacctcac
ctgagaaactctggcgcacctagaaatgcaggaaatgcttattccgctggtacacagtac
ggttattcagtggcaccagtaaacctctattcacctggatgggacggtggccgcagcaat
ggatatgtgaatggtgatcacgacaaccgctctaatgggggctatggaggacgaggagcc
cctcgcaatgatagaggtgtaggcagtgaaggaaactttgcagctcctcgtgatgccgcc
tacaacagctttggcggacgcaacaacgataggtcaaagtccaccttcttcaacgaccgt
gggtcgagctcaaggggaagttatagtcgcgggggttactccagcggcggcggaggagga
ggaaaccgctggtcggacgaatccagagacgaagattggtccaagctcaccgctcccaac
gagcgcctggaaaatgagctgttcggtgcaagcaacactggtataaactttgagaagtat
gacgatattcccgtggaggccacaggaagcaactgcccgcctcacatcgacaccttccac
gatgttgacatgggtgagattatcatggcaaacatcgccatgagccgttacgatcacccc
accccggtccagaagcacgccatccccatcatcaagtccaagagagacctgatggcctgc
gcgcagactggctctggtaaaacggctgccttcctgctgccggtgctgagccagatctac
agcgaaggccccggagaagctctcgcagcatcgaagaacggaggacaggatagtggaagg
tatggccgccgcaagcagtaccccctcgccatgatcctggctcccaccagagagctggcc
tcacagatctacgacgaggcgaggaagtttgcctaccgctcacgtgtgcgctgctgcgtt
gtgtacggaggcgccgacatcgggcagcagatcagagagctggagcgaggctgccatctg
gtggtggcgacacccggacgcctcgtggacatgttggagcgcgggaagatcggactggac
tattgcagcttcctggtcctggacgaggctgatcgtatgttggacatgggtttcgagccc
cagatcagacgcatcgtggagcaggacaccatgccgcctaaaggcatccgacagaccatg
atgttcagcgccaccttccccaaagagatccagatccttgctcgtgacttcctggaggat
tacatcttcctggccgtgggccgtgtcggctccacttcagaaaacatcacccagaaggtg
gtgtgggtcgaggagaacgacaagaggtccttcctgctcgacttgctcaatgctacagtt
attcccactgatgaaaatgtgccggaggttccagagaaaccgggtaaagagtctctgacg
ctggtgttcgtggagaccaagaagggcgcggacgccctggaagacttcctgtaccacgag
ggctactcctgcaccagtatccatggagaccgatcccagcgagaccgagaggaggcgctg
gcccagttcagatccggacgctgccccatcctcgtggccacagctgtggctgccagaggt
ctggacatcagcaacgtgaagcacgtgatcaacttcgatctgcccagcgacatcgaggaa
tacgttcaccgtatcggccgtacgggacgtgtgggaaacctgggtctggccacgtcgttc
tttaacgacaaaaacagcaacataaccaaagacttgctggacatcttagtggaggcgaag
caggaagttccctcatggctggagagcctggcctacgagcaccagcacaagagcacgacc
cgagggcgctccaagaggttcgccggtggtttcggagccagagattaccgccagacgccc
ggaggcggaccctccagcttcactacgccccgtggaggtcgcagcgctggaggaggccgt
ggatttggaggaggcggaggtggattcggtggtggcggcggaggaggcttctacggcgga
ggaggaggaggaaacgacggcggttacggaggaagctacagcaactccggcagcggcacg
gattggtgggggaactag
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integrated database retrieval system
