Pseudochaenichthys georgianus (South Georgia icefish): 117443634
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Entry
117443634 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117443634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117443634
03041 Spliceosome [BR:
pgeo03041
]
117443634
03009 Ribosome biogenesis [BR:
pgeo03009
]
117443634
03016 Transfer RNA biogenesis [BR:
pgeo03016
]
117443634
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117443634
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117443634
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117443634
Complex C
U4/U6.U5 tri-SnRNP related factors
117443634
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Pre-60S particles
Helicases
117443634
Transfer RNA biogenesis [BR:
pgeo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117443634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
117443634
NCBI-ProteinID:
XP_033935430
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPS
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIE
KYEAQYNSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNDD
ADFGWGVVVNFCKKSNVKSTTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEMQ
VVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKD
PALKKVIQKVEAFEHRMYSHPLHSDPNLEAVYSLCEKKAVIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTCEQSTA
LLSCFVFQENASEMPKLTETLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcaacatgccggcccgcaccgtcctcttcaccagcgcccggaaatttgacggc
aagaaccaccgttttatcacatcgggcgagtacatccagatgtctgggcgagccggcagg
agaggaatggacgaccgaggaatcgttatcttcatggtggacgaaaagatgagtccatcg
atcggcaaacagcttctcaagggctccgcagaccctctgaactctgccttccacctgact
tacaacatggtgctgaatctgctgcgcgtcgaggagatcaacccggaatacatgctggag
aaatctttctaccagttccagcattacagagcgctgcccggcgtcgtggagaagatcgag
aagtacgaggcgcagtacaacagcatcgagatccccaacgaggagggcgtggtgacgtac
tttaagatccgacagcagctcgccaagctggggaaagagatccaggagttcacgcacaaa
cccaaatactgcttacccttcctgcagcccggcagactggtcaaggtgaaaaatgatgac
gctgacttcggctggggagtggtggtgaacttttgcaagaagtcgaacgtgaagtccacc
acggactctgagcctctgtacgtggtggaggttctggttcactgcagcaaggacagcgtg
aaggatgctgccactgaggcggctaaacctgcagctccaggagagaccggggagatgcag
gtggtcccagtgatgctgcatctcctgacctccatcagctccgtccgtctctacatcccc
aaagatctgaggccctttgacaaccggcagctgatgctcaagtccatacaggaggtgcag
aagcgcttcccggacggcgttcctctgctggatcccgtggacgacatgggcatcaaagac
ccggcgctgaagaaggtgatccagaaggtcgaggccttcgagcaccgcatgtactcccac
cctctgcacagcgaccccaacctggaggccgtgtactcgctctgtgagaagaaagctgtg
atcgcagcagacgtccgcacggccaagagagagctgaagaaggcgcgcaccgtgctgcag
atggacaaactgaagtgcaggaagcgagtcctgcgacgcctcggattcgccagtccgtcc
gacgtcatcgagatgaaaggacgcgtcgcctgtgagatcagcagcggcgacgagctgctg
ctcacggagatggtgtttaacggcctgttcaacgacctgacgtgtgagcagtccacggct
ctgctgtcctgcttcgtcttccaggagaacgccagtgagatgccaaaactgactgaaaca
ctagcagctcctctgagacaaatgcaggagtgtgcaaagcgcatcgcgaaggtttctgcg
gacgccaagctggaagtggacgaggagacgtacctgaaccagttcaagcctcacctgatg
gacgtggtgttcgcctgggccaacggggccaccttcgctcagatctgcaagatgaccgac
gtcttcgaagggagcatcatccgctgcatgcgtcgtctggaggaagtcctgagacagatg
tgttcggctgcgaaggccatcggaaacacggagctggagaacaagttcgctgaaggaata
acgaagatcaagagggacattgtgttcgctgccagcctctacctttaa
DBGET
integrated database retrieval system
