Pseudochaenichthys georgianus (South Georgia icefish): 117443693
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Entry
117443693 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117443693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117443693
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117443693
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117443693
Coactivators
SAGA/TFTC/STAGA complex
117443693
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117443693
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
117443693
NCBI-ProteinID:
XP_071057778
LinkDB
All DBs
Position
3:complement(50603407..50755097)
Genome browser
AA seq
1004 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLSGQSNPGGKAEENGGSVAPANHHLGKTL
PAQAQQQQGRRYNKPEMHQDANCKDTTVPSSPAGCTASFTDLTATSAACGGSQSHGASIT
TLTASGVSTLASTPGSSISTASSKVSPGKRVNTPRRNASARIKSLNGAAVGTRRNSNTGE
NLSPPVDATTPNSAPLAVTSSINASTFTLSHANIPAGQSAIALDRGTPTIALQRLPSHIV
ASIAQNGTSVSALVQQGAPVGSAEPAEAAPPGNHSKTLTDTSKADDCQSKIVMSGQPVGG
VVNSVINSSVVTPPPTTTITMTTAATTTTTTVPQPQISATSTAGSPCVSALTPPVTSTVS
MIRPTMPSPTQSPPPRPGLAAPQRIVAPQLIVRPPQQQTTIQLPPGFSIPQGMVLVRTEL
GQLVMVPQQALAQAQAQAQAQAQNNISPRPPTPTAGAPTFRMTTPQSPATPQPPRQCPPA
KMAPSPSPSPSGPALQTSCSSSSSSCPALRPKGPVAPAVAAPQQTPVAVAPPAPPQPHQQ
TGVTANTGGPIVSGEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIE
PEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLSSQHTVTHPPHQGLKPAPGGPPPA
IAAGPAVRIRPPHSVSVTAGAGMGHAAGMGMRAGAMSGQVRMPTGITHPVRAQGTMCKAG
FIQGRSPVAAQMCGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELV
GTHIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFISHAAQSRLRTVVEKVSCI
AQQRLDSCKDEEGYEQSADVRTQLRFFEHLERLEKQRKDDQEREMLLKAAKSRSRQEDPE
QARLKQKAKEMQQQELAQVRQREANLTALAAIGPRKKRKMDSPGATPSGTEVSGSSMDSP
SGSSSSRQYARQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctgttttcagaggtggatgagaaagct
gtgagcgacctggtgggctcgttggagtcccagctgtccggacaaagcaaccccggaggg
aaagcagaggaaaacggaggctccgtggcccccgctaaccatcacttagggaaaacgcta
ccagcacaggcacaacaacaacaaggacggcggtataataaacccgagatgcaccaggac
gcaaactgcaaagatacaactgtaccatcttcccctgcaggatgcacggcttccttcacc
gatcttaccgccacttctgcagcctgtggcggctcgcagtcacacggagcatccatcaca
acactgaccgcttctggtgtgtcaactttggcatcgacgccgggcagcagcatcagcacc
gcctccagtaaggtgagcccggggaaacgcgtgaacacaccgaggagaaacgcttctgct
cggatcaagagtttgaacggcgccgctgtagggaccaggaggaacagcaacacgggggaa
aacctgagccctcctgtggatgcaactactccaaactctgctcctctggcggtgacgtcc
tctattaatgcttctacgttcaccctgtctcatgcaaacatccccgcaggacagtccgct
attgctctggaccgggggactcccaccatcgcgctgcagagactcccgagtcacattgtg
gcgagcatagcccagaatggcaccagtgtttcggccttggtgcagcagggtgccccggta
ggatccgcggaaccagcggaagcagctccaccggggaaccacagcaaaacgctcacagac
acttccaaagcagacgattgtcagtccaaaattgtaatgtcaggtcaacctgttggtggt
gttgttaactctgtcataaactcctctgttgtcacaccaccaccaacaactacaattact
atgactacggcagctacaacaacaacaacaacagtaccccagcctcagatctccgctacg
tccacagcagggtctccgtgtgtgagtgctctgactccaccagtgacctccactgtgagc
atgatcagacccacaatgccctccccaacccagtctccacccccccgccctggactcgca
gcccctcagaggatcgtggccccccagctgattgtgagaccccctcagcagcagaccacc
atccagctgccccccgggttcagcatccctcaggggatggtgctggtgcgcacggagctg
ggtcagctggtgatggttcctcagcaggcgttggcccaggctcaggctcaggctcaagct
caggcccagaacaacatctctccacggccccccacccccacagcaggagcccccaccttc
agaatgaccaccccccagtctccagcgacccctcagccccccaggcagtgtcctccagcc
aagatggctccttctccttctccctctccttcaggccctgccctccagacctcctgctct
tcctcctcttcctcctgtcctgcactccgcccaaagggccccgtggctccagctgtggcg
gctccgcagcagacccccgtggccgtggcccccccggcccccccccagccccatcagcag
acgggcgtcaccgcgaacaccgggggacccatcgtgtccggggaaatgcaggagaatgtg
aagaagtgtaagaatttcctggccacactcatcaagctggcgtctcacaactctccgtcc
ccagagacctcgaagaacgtcaagtctctggtccaggacctgctggatgcgaagatagaa
ccggaggagttcaccagccggctgcagacggagctcaagtcctctccgcagccctacctg
gtgcccttcctcaagaagagtctcccggccctccggctctccctgttgagcagtcagcac
accgtgacccatcccccgcaccagggactcaaaccagcacccggcggccccccccctgcc
atcgcggctgggccagctgtccgcatccgccccccccacagcgtcagcgtcaccgcagga
gccgggatgggacatgcagctggcatgggaatgagagcaggcgcgatgagcggccaggtc
cggatgcccacggggatcacgcatcctgtcagagcgcaaggcacgatgtgcaaggcggga
ttcatccaaggcaggagtcccgtggcggctcagatgtgtggaaatcagaaaaacaagctc
aacgaccccggaggaggctcgttcagggacgatgatgacattaacgacgtggcctccatg
gccggggtgaacctgaacgaggagagcgccagaatactcgccaccaactctgagctggtg
ggaacgcacatccgctcgtgtaaagacgaagccttcctccatccgggactgctccatcga
cgaatcctggagacagctaagaagtttggagtcacagaggtcccgatggaggcggtcacg
ttcatctcacacgccgcacaatcacgacttcgaactgtcgtagagaaggtttcctgcatc
gctcagcagcgactggactcctgtaaggacgaagagggctacgagcagtctgcagacgtt
cgcactcagctccggttcttcgagcatctggagaggctggagaagcagaggaaggacgac
caggagagagagatgctgctgaaggccgcgaaaagtcgctccaggcaagaggacccagag
caggctcgtctgaaacagaaagctaaagagatgcaacagcaggaactggctcaggtgagg
cagcgagaggctaaccttacagcgctagccgccatcggaccccgaaaaaaacgtaaaatg
gattcaccgggggccacaccatcagggaccgaggtgtcaggcagctcgatggactccccg
tccggctcctcctcgtcgcgtcagtacgcacggcagcgcatcacacgcgtcaacctcagg
gatttaatcttctacatggagcaggagagagagaccgcccactccctcctcctctaccgc
gccctgctcaagtag
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