Pseudochaenichthys georgianus (South Georgia icefish): 117444258
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Entry
117444258 CDS
T09629
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117444258 (trpc1)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117444258 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
117444258
NCBI-ProteinID:
XP_033935813
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MHISVCPYSLSVVMAALYQGTDTSSPDKISGLERRERGEEEETTLDEKLFLLACEKGDYY
MVKKLLEENRHGELNLNCVDVLGRDVITITIENENLDILQLLLEHGCQATDALLVAIDSE
VVGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQ
DISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELS
ADLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSNEDQVDKRGLL
EERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLW
PLLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFSFLLLLNLYSLVYNEGKKNTMGPALE
MIDFLLILWIIGMVWSDVKRLWYQGLEDFLEESRNQLSFVMNSLYLATFALKIVAHSKFK
NVEDTERKNWDAFHPILVAEGLFAFANILSYLRLFFMYTTSSILGPLQISMGQMLQEFGK
FLGLFLLVLFAFTIGLTQLYGKDQRDPDKHPPKDCEGIFCQQQSNDAFHTFMGTCYALFW
YIFSLAHVALFVTRISYTEELRSFVGAMIIGTYNIVVVIVLTKLMVAMLHKSFRQIANHE
DKEWKFARAKLWLSYFDDKCTMPPPFNILPSPKTVVYLVTSMSKWICSHTSKGKVKRQNS
LKEWKTLKQKHDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMR
DLLGFRTSKYAMFYPRS
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttgcccgtactcgctctccgtcgtaatggcagctctgtaccagggc
acggacacttcctctccggataaaatttctggccttgaaagacgtgagagaggtgaagaa
gaggaaactacgctggacgagaagctcttcctgctggcatgcgagaaaggcgactactac
atggtgaagaagctgctggaggagaaccggcacggcgagctcaacctgaactgcgtggac
gtcctgggccgagatgtcatcaccatcaccatcgagaacgagaacctagacatcctgcag
ctcctcctggaacatggctgccaggcgacagacgccctgctggtggccatagactctgag
gtggtgggagccgtggacatcctcctcaaccaccggcccaggagatcctccaagccctcc
attgctaaactgatgcagcggatccagaacccagagtactccaccaccatggacgtggct
ccggtcatcctggcggcccacaggaacaactacgagatcctgaccatgctgctgaagcag
gacatctctcttccccggccgcacgccgtcggctgcgagtgcacgctctgcaacgctaag
aacaaaaaggacagcttacgacactccaggtttcggctggacatctaccgctgcctggcc
agcccctctctgatcatgctgacggaagaagaccccatcctcagggcctttgagctgagt
gcagacctccgggagctcagcctggttgaagtggagtttaggaatgattatgaggaactg
gcgaagcagtgtaagatgttcgccaaggatctgctggcccaggctcgaaattctcgagag
ctggaagttattctcaaccacacgtccaacgaggatcaggtcgacaagagaggcttactg
gaggagagaatgaacctcagtcgactcaagctcgccatcaagtacaaccagaaagagttt
gtggctcagtccaactgtcagcagttcctcaacaccgtctggttcggagagacggcgagt
taccggcgcaagcacacgtgtctgaaaatggccacggtgctgagcgtggccatgctgtgg
cctctgctctccgtctgctaccttctggtgccgcgctctcgcgtcggacagatcatccac
acgcccttcgtcaagttcatcatccacagcgcctcgtacttctccttcctgctgctgctc
aacctgtactcgctggtctacaacgagggcaagaagaacaccatgggccccgcgctggag
atgatagacttcctgctcatcctctggatcatagggatggtgtggtcggatgtgaagcgg
ttgtggtaccaagggctggaagactttctggaagagtctagaaaccagctgagcttcgtg
atgaactccctttacctcgccacctttgccctgaagatagtcgctcatagcaagttcaag
aacgtggaggacacggagaggaagaactgggacgccttccaccccatcctagtcgccgag
ggcctgttcgccttcgccaacatcctcagttacctgcgcctcttcttcatgtacaccacc
agctccatcctggggccgctacagatctccatgggtcagatgctgcaggagttcgggaag
tttctgggcctcttcttgttggtgttattcgccttcaccatcggactcacccagctgtat
gggaaggaccagagagacccagacaagcatcctccaaaggactgcgagggcatcttctgc
cagcagcagagcaacgatgcatttcacacgtttatggggacctgctacgccctgttctgg
tacatcttctccctggctcacgtggcgctcttcgtcacacgcatcagctacactgaggaa
ctgcgctcgttcgtgggcgccatgatcatcggcacctacaacatcgtggtggtcatcgtg
ctgaccaagctgatggtggccatgctccacaagagcttcagacaaattgctaatcacgag
gataaggagtggaagttcgctcgggccaaactgtggctaagctacttcgatgataagtgc
accatgcctcccccgttcaacatcctcccctcccccaaaacggtcgtgtacctggtgacc
agcatgagcaagtggatctgctctcacacgtcaaaggggaaggtgaagagacagaacagc
ctcaaggagtggaagaccctgaagcagaagcatgatgagaactaccagaagatcatgtgc
tgtctggttcaccgctacctgacctccacacggcagaagatgcagagcacagaccaggcc
acggtggaaaacctcaacgacctgcgccaagacctgtccaagtttcgcaacgagatgagg
gacctgctgggcttccggacctccaaatacgccatgttctaccccaggagctaa
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