Pseudochaenichthys georgianus (South Georgia icefish): 117444465
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Entry
117444465 CDS
T09629
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117444465
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117444465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ion_trans
Ank
Ank_4
Ank_5
Ank_3
PKD_channel
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
117444465
NCBI-ProteinID:
XP_033935906
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MILTVPTRGTFGTRVQLSTLRPTHETNGAYTGRLGHVYSSLPSDRLMRLTVPTDGTFGTR
VQLSTLRPTHETNGAYTRDVWDTCTALYSTPSDRLTRLTVPTDGTFGTRVQLSTLITTHE
TNGAYRRDVWDTDYKDWTCLHHAASEGYTQTMEILLSANIKLLDKKDEDGSTALHVAAKA
GHVAAVRLLLARGADHHFEQHDSSFMHEALQNGRKDVVNAVIDSDRVRESLITFTPGSGR
DCPILEMIEFLPENYKHLMDRCVTESEHDHNCPDYHIDYSFQWLQAPLKIMKTYKDKNVK
IQPLAALNAMVKYNRIELLNHPVCKKYLAMKWFAYGSTIHIVNMVMYLMGLLPLTHLIVM
QRPALNTSDTGEHHVVMVPTSFVEQTVFLSFCMMMVFVMNIYFIGKELVQISQQRWSYFK
DYSNQSDWFSAVLSLLFIVPTMMNAEGSLHWQAGSLAVLSSWIGFLLYLQRFEGVGIYVV
MFWEIMRTLIRIVMIFLYLMLAFALAFHALMLNQREFDSVPLSVVQTFVMMVGELNYQNN
FLDTYLNNELPFGVLTYIIFIVFVLLMPILLVNLMASLAVGDIAEVQRNAALKRIGMQIE
LHTSLEDKLPYWFMKRVDKPSITVYPNRYCPRNVLREFFTGEEESHDAWSRMQMKSQTCS
MLESEIKKQKLRMKEVSCLMEKQHTLLKLIIQKMEITTEESEVDGPANVRGNLWPSVPKA
KRHAAGMSRWVPLMKALEGKKT
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgatactaacggtgcctacacgcgggacgtttgggacacgtgtacagctctctaccctc
agaccgactcatgagactaacggtgcctacacgggacgtttgggacacgtgtacagctct
ctaccctcagaccgactcatgagactaacggtgcctacagacgggacgtttgggacacgt
gtacagctctctaccctcagaccgactcatgagactaacggtgcctacacgcgggacgtt
tgggacacgtgtacagctctctactctacaccctcagaccgactcacgagactaacggtg
cctacagacgggacgtttgggacacgtgtgcagctctctaccctcataacgactcacgag
actaacggtgcctacagacgggatgtttgggacactgattacaaggactggacgtgtctg
caccacgctgcctccgaaggatacacacagacgatggaaatcctgctttcagccaacatc
aagctgctggataaaaaggacgaggacgggagcacggccctgcacgtggcggcgaaagca
ggtcacgttgctgcggtgcgcctcctgctggctcggggtgcagaccatcactttgaacaa
cacgacagctcctttatgcacgaagcgctgcagaacgggaggaaggacgtggtgaacgcg
gtcatcgatagtgacagagtgagggagtctctgatcacgttcacgcccggctccggccgt
gactgtcccatattggaaatgattgagtttctgccggagaactacaagcacctgatggac
cgctgtgtgaccgagtctgagcacgaccacaactgtcccgattatcacattgattacagt
ttccagtggctccaggctccgctcaaaatcatgaaaacgtataaagacaagaacgtgaag
atccagccgctcgccgcgctcaacgcgatggtgaagtacaaccgcatcgagctgctcaac
caccccgtgtgcaagaagtacctcgctatgaagtggtttgcgtacggcagcacgattcac
atcgtcaacatggtgatgtacctgatgggtctgctgcccctcactcacctcatcgtgatg
cagagaccggctctgaacaccagcgacaccggagagcatcacgtcgtcatggtgcccacc
tccttcgtcgagcaaaccgtgttcctgtccttctgcatgatgatggtgtttgtgatgaac
atctacttcatcgggaaggagctggtgcagatatcacaacagcgctggagttacttcaag
gattattccaaccagagcgactggttttccgccgtgctctcgctcctcttcatcgtcccc
accatgatgaacgccgaaggctctctgcactggcaggccgggtctctggccgtgttgagc
tcctggatcggattcctgctttacctgcagaggtttgaaggcgtaggaatctacgtggtg
atgttctgggagatcatgaggacgctgatacgcatcgtgatgattttcctgtacctgatg
ctagcgttcgctttggctttccacgctctgatgctcaaccagagggagtttgacagcgtg
cctctgtcggtggtgcagaccttcgtgatgatggtgggcgagctgaactaccagaacaac
ttcctggacacgtacctgaataacgagctgcccttcggagtcctgacctacatcatcttc
atcgtctttgttctgctcatgcccatcctgctggtcaacctgatggcgagtttagccgtt
ggagacatcgccgaggtgcaacgaaatgctgctctaaaaagaataggcatgcagattgag
ctgcacacctctctggaggacaagctgccgtactggtttatgaagcgagtcgacaaaccc
tcgatcaccgtctaccccaaccgctactgccccaggaacgtcctcagggagtttttcaca
ggagaggaggagtcacatgacgcgtggagccgcatgcagatgaagtctcagacctgctcc
atgctggagagcgagatcaagaagcagaagctcaggatgaaggaggtgtcctgcttgatg
gagaagcagcacaccctcctgaagctcatcatccagaagatggagatcacgacggaggag
agcgaggtggacgggccggctaacgtccgaggaaacctttggccgagcgtaccgaaggcc
aaacgtcacgctgcaggaatgtcccgctgggtcccgctgatgaaggccctcgagggaaag
aagacctga
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