Pseudochaenichthys georgianus (South Georgia icefish): 117445086
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Entry
117445086 CDS
T09629
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117445086 (lingo3a)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117445086 (lingo3a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
LRR_14
Ig_2
LRR_9
LRR_LRWD1
LRRNT
LRR_RPS2
V-set
Cupin_1
LRR_6
Motif
Other DBs
NCBI-GeneID:
117445086
NCBI-ProteinID:
XP_033936379
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All DBs
Position
4:6922430..6958482
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AA seq
610 aa
AA seq
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MGVSLGQDVGWLLPFLFLLFMITVSPSHAQGCPQRCDCIAKLKTVSCFGKRLSSLPDGIP
GDTKTLDLTGNKLRWVEHGDLLPFTRLEKLDLSENMISVLEPNAFSSLQNLQSLSLRSNQ
LKLVPMGAFSRLSNLTSLDLSGNTIVILLDFTFQDLKSLTNLEVGDNDLVYISNKAFLGL
VGLKELTIERCNLTSVSSQSLSYLQNLVTLRLRYLSISSLEDQNFRKLGNLKGLEIDHWP
FLEHIAPHSLQGLNLSWLSITHTNITTVPTSALRSLAHLTSLNLSHNPISVLESWALRDL
IRLKELHLVNTNLVVVQPYALGGLRSIRLLNFSNNGLVSLEEGAFQSVNTLETLRLDGNP
LACDCRLLWILQRRKTLNFDGASPVCMSPVEVQGRALNAFSDSALFDHFTCQKPKIRNRK
LQQVTAREGQVVSFICKAEGEPAPMIFWISPQRRRITTKSSGRLTVLPEGTLEIRYAQVT
DSGTYICIASNAGGNDTYFATLTVSGLPLDAALMANRTYYAGDLNDTNLNDTRVFLKFTL
DLQTILISTAMGCIMFLGVVLFCFILLFVWSRGRGQHKNNFSVEYSFRKVDGPAASGGQG
GARKFNMKMI
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgagtctgggccaggatgtaggctggctcctgcctttcctgttcttgcttttc
atgatcacagtgtcacccagccatgctcaaggatgtccccagcgttgtgattgcattgca
aaactcaagactgtgtcctgtttcggcaaacgcctgtcctcactgccagatggcatccca
ggggacaccaagaccctggacctcaccgggaataaacttcgctgggtggagcatggtgac
ctgctcccatttacacgtcttgaaaagctggacctgagtgagaacatgatcagtgtcctc
gaaccgaacgctttttctagtctccagaacctccagtcgctttcactgaggagcaaccaa
ctgaagctggtccccatgggggctttctcacgtctctccaacctgacttcattggacctc
agtgggaatacgattgtaattcttttggactttactttccaagatttgaagagtctgacc
aatctggaagttggagacaatgatttagtttatatttccaacaaggccttcctgggtcta
gtggggctgaaggagttaaccattgagcggtgcaacctgacgtctgtgtccagccagtct
ttgtcctacctgcaaaacctggtgactctgcgcctgcgctacctcagcatctccagctta
gaggaccagaacttccgtaaactgggaaacctgaagggccttgagatcgatcactggccc
ttcttggagcacattgcccctcacagcctgcagggtctcaacttatcttggctgtctata
actcacactaacataaccactgtgcccacctctgccctacgcagtctggcgcatctcacc
agcctcaacctctcccacaaccccatctctgtgctggagtcctgggcgctgcgggacctt
attaggctgaaggagctgcatctagtaaacacaaatctggtggtggtgcagccatatgcg
cttggtggtcttaggtccatccgtcttcttaacttctccaataacggcctggtgtccctg
gaagagggagcctttcagtccgtcaacactctggagacgctgcgtttggacgggaaccct
ttggcctgcgactgccgcttgctatggatcctccagcgcaggaagactcttaattttgac
ggcgcctccccagtgtgcatgtcgcccgtggaggtgcagggacgggcgcttaacgctttt
tccgactcagctctctttgatcactttacctgccagaagcccaaaatccgcaataggaaa
ctgcagcaggttactgcccgcgagggacaggtggtgtctttcatttgcaaagcagaaggt
gagccggcaccgatgatattctggatctctcctcaacgccgccgcatcaccacaaagagc
agtggccgcctcacagtgttaccagagggcactttagaaatacgatacgcacaggtgaca
gacagtgggacctacatctgcatagctagcaatgctggtggcaatgacacctattttgcc
acacttacagtcagtgggctgcctctagatgcagctcttatggccaaccgcacgtattat
gctggagaccttaatgacacaaatctgaatgacaccagagtcttcttgaagtttactttg
gacctacagaccatcctcatatccacggctatgggctgtatcatgttcctgggggtggtt
ctcttctgtttcattctgctctttgtgtggagtcgaggcagagggcagcacaagaacaat
ttctcagtggagtattccttcagaaaggtggatggacccgctgccagtggagggcagggt
ggggcacgcaagttcaacatgaaaatgatttga
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