Pseudochaenichthys georgianus (South Georgia icefish): 117445128
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Entry
117445128 CDS
T09629
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein isoform X2
KO
K06839
slit 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117445128 (slit2)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117445128 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
LRR_5
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
hEGF
LRRCT
LRR_1
EGF_TEN
LRR_14
JAG1-like_EGF2
EGF_DL_JAG
LRR_EndoS
EGF_3
Laminin_G_3
cEGF
Motif
Other DBs
NCBI-GeneID:
117445128
NCBI-ProteinID:
XP_033936455
LinkDB
All DBs
Position
1:26012044..26110545
Genome browser
AA seq
1570 aa
AA seq
DB search
MMVGTLSPAGPAGHGRSPVTALGLLAVLLSVLSGGADGQPCPAQCSCTGTTVDCHGQGLR
SVPRNIPRNTERLDLNANNLTKITKADFAGLRHLRVLQLMENKITTIERGAFQDLKELER
LRLNRNNLAVFPELLFLGTTKLYRLDLSENQIQGVPRKAFRGAVEIKNLQLDYNHISCIE
DGAFRALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLQCDCNVAWLSEWLRQR
PRLGLYTQCMAPPHLRGHNVAEVQKKEFACTGHQSSSSSSCSVIQCPESCTCSNNIVDCR
GKGLTEIPTNLPETITEIRLEQNAIKVIPAGAFSPYKKLRRIDLSNNQISELASDAFQGL
RSLNSLVLYGNKITEISKALFEGLFSLQLLLLNANKIACLRVDAFQDLHNLNLLSLYDNK
LQTIAKGTFSSLRAIQTLHLAQNPFICDCHLKWLADYLQDNPIETSGARCTSPRRLANKR
IGQIKSKKFRCSAREQYFIPGTEDYRSKLGGDCFADLACPEKCRCEGTTVDCSNQKLTKI
PDHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINLSNNRITDIEEGTFEGASGVNEL
ILTSNRLENVHHLMLKGLGGLRTLMLRSNRISCVSNSSFVGLSSVRLLSLYDNQITSMNP
GAFDTLHSLSTLNLLANPFNCNCHLAWLGDWLRRKRIVTGNPRCQNPYFLKEIPIQDVAA
QDFACEDDNNENSCSPVLRCPAECSCLDTVVRCSNKGLNTLPKGLPKETTELYLDGNHFT
QVPVELSDYKHLTLIDLSNNQISTLSNHSLSNMSELLTLILSYNRLRCIPVRSFDGLKSL
RLLSLHGNDISLIPEGAFKDLSSLSHLALGANPLYCDCHMQWLSDWVKSGYKEPGIARCT
GPGDMTDKLLLTTPSKKFTCTGPVDMNIQAKCEPCLSNPCKNDGSCSNDPVNYYRCNCPF
GFKGQNCEEPIHACISNPCHNGGTCHLKEGEESNFWCVCPEGFEGDACEINIDDCEDNDC
ENNSTCVDGINNYTCMCSSEYTGELCEEKLDFCAPDLNPCQHDSKCILTPQGYKCECTPG
YVGEHCELDYDDCEDNKCQNGGQCIDAVNGYTCICPEGYSGLFCEYSPPMVLPRTSPCDN
HECLNGAQCVVVGTDPRCQCLQGYEGESCETLVSVNFVNRESYLLLPSSLLSPETNISLQ
IATDEDSGVLLYKGDNDHIAMELYRGRLRVSYDTGSYPPSAIYSVETVNDGIFHAVELVA
SDQTLSLSIDGGTPKSINSLSKQSTLNIDSPLYLGGMPERASGSGGPSSLQHSSGGRNGT
SFHGCLRNLYINGKLQDLGAGLGSGALGSTAAQSTSRQWLGQGVEPGCQPCQRGACVQGD
CHPTGHRGFTCTCHPGWTGTVCDEQVNNPCDGNKCIHGTCLPINSYSYSCRCQPGFAGVL
CDEQDQDTANPCSMSHCKHGKCRVSGLGKAYCECNSGYTGDACDREVACRGERIRDVYQR
QQGYAACQTQEKVSRLECRGSCPGGAEGQGTCCTPLRSKRRKYTFQCTDGSSFVQEVEKV
VKCGCTKCSS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgggaactctgagccccgctggccccgctggccacggccgctccccggtgact
gcgctggggctgctggccgtcctgctctcggtcctgtccggcggagcggacggacagccc
tgcccggcgcagtgctcctgcaccgggactaccgtagactgtcacggccaagggctccgc
agcgtgcccaggaatatcccccgcaataccgagagactggatctgaatgcaaacaacctc
actaaaatcaccaaggcggattttgcaggactgaggcatctgcgagtgttgcagctaatg
gagaacaaaatcaccacaatagagagaggagcgttccaggacctgaaggagctggagaga
ctgcgcctgaatcggaataacctggccgtgttccccgagctgcttttcctgggaacgaca
aaactttacagacttgatctcagcgagaaccagattcagggggttccacggaaagccttc
agaggagctgtggagatcaagaacctccagttggactacaaccacatcagctgtattgaa
gatggagctttccgagcgttacgtgacctggaagtgctcaccctcaacaacaacaacatc
agccgtctgtctgtggccagtttcaaccacatgccgaagctaaggaccttccgcttgcac
tccaacaacctgcagtgtgactgcaacgtggcctggctgtcagagtggctgcgacagcga
ccccgtctgggtctctacacacaatgcatggcccctccgcacttgagggggcacaacgtg
gctgaggtgcagaagaaggagtttgcctgcacaggtcaccagtcgtcatcatcttcctcc
tgcagtgtgatacagtgcccagagtcctgtacctgcagtaacaacatcgtagactgcaga
gggaagggactgacagaaatacccaccaacctgcctgaaaccatcactgagatacgactg
gagcagaacgccatcaaggtgatcccagctggagccttttctccttataagaagctgcgc
aggattgacttgagtaacaaccagatttccgagttagcctcagacgccttccaaggtctg
cgctccctcaactctctggtgttatacgggaacaagatcactgagatttccaaagcactg
tttgagggacttttttctctgcagctattgttactgaatgctaataagatagcgtgtctg
cgtgtggatgcatttcaggacctccacaacctcaaccttctctcactatatgacaacaag
ctccaaaccatcgccaaagggaccttctcatcactaagagccatacaaacgcttcactta
gcccagaacccgtttatctgtgactgccatctgaagtggctggcagactaccttcaggac
aatcccatcgagacgagcggcgcccgctgcaccagcccccgacgcctcgccaacaaacga
atcggacaaatcaagagcaagaagttccgctgctcagctagagaacagtatttcatccca
ggtactgaagattaccgcagtaagcttggaggggactgcttcgccgacttggcctgccca
gagaagtgccgctgtgagggcaccacggtggactgctccaaccagaaactcaccaaaata
ccagatcacatcccccagtacaccgccgaactgcgtctgaacaacaatgaattcactgtg
ctcgaggcgacagggatcttcaaaaagttgcctcagctgagaaagattaacctgagcaat
aaccgtatcactgacatagaggaggggacatttgaaggagcctccggggtcaacgagttg
atcctgacctccaacagactggagaacgtacaccacctcatgctgaagggactcggtggc
ctccgcacacttatgctgaggagtaatcgtatcagctgtgtgagtaacagcagttttgtg
gggttgagctccgttcgtctgctgtcgctctacgacaaccagatcacctccatgaaccct
ggagccttcgacacattgcactccctgtccacactcaaccttctggccaatccctttaac
tgtaactgtcacctggcctggctcggtgattggctcagaaggaaacgcatcgtcacgggt
aaccctcgctgccagaatccttatttcttgaaggagatccccatccaggatgtagctgcc
caggatttcgcctgtgaagatgataacaacgagaacagctgctccccagtgctgaggtgt
cccgcagagtgctcctgtctggacacggtggtgcgctgcagcaacaagggcctcaacacg
ctgcccaaaggcctgcccaaagagaccaccgaactgtatcttgatggcaaccacttcact
caggttcctgtggagctctccgattacaaacacttaacactcattgatttgagtaacaac
cagatcagcacgttgtccaaccacagcctcagtaacatgtccgagctgcttaccctaatc
ctgagctacaaccgcctgcgctgcataccagtgaggtcgttcgatggactcaaatctctc
cgtctcctgtctctccatggtaacgacatatcactgataccagagggagccttcaaagac
ctgtcatcgctctcccacctggctctgggggccaaccctctgtactgtgactgccacatg
cagtggctgtcagattgggtgaagagcggctacaaggagcctggcatcgcccgctgcacc
ggccctggtgacatgaccgacaaactgctgctcacaacgccttccaagaagttcacctgc
acaggtcctgtagatatgaatatacaggccaagtgtgagccttgcctgtctaacccctgc
aagaatgatggctcctgctccaacgacccagtgaactactaccgctgcaactgccccttt
ggatttaagggacaaaactgtgaggaacccattcatgcctgcatcagtaacccgtgccat
aatggaggcacttgtcacctgaaggaaggagaagagagcaacttctggtgtgtgtgtcca
gagggctttgaaggcgacgcatgtgagatcaacatcgatgactgcgaagacaacgactgt
gagaacaactccacctgcgtcgatggaatcaacaactacacttgcatgtgctcatcagaa
tatacaggggagctatgtgaagagaaactggatttttgcgctccagacctgaacccttgt
cagcacgactcaaagtgcattttgacccctcagggatacaagtgtgagtgcactccaggg
tacgtgggtgagcactgtgagctggactacgacgactgtgaggacaacaagtgtcagaac
ggagggcagtgcattgacgcagtcaacgggtacacctgcatctgtccagagggatacagc
gggttgttctgtgagtactctcctccgatggtccttcctcgcaccagcccctgtgacaac
cacgagtgcctcaatggggcgcagtgtgtcgtcgtgggaacagacccccgctgccagtgt
ctccagggctacgagggcgagagctgtgaaacgctcgtcagtgtcaactttgtcaaccgc
gagtcctacctgctacttccctccagtctcctctcaccagagaccaacatcagcctgcag
attgctacagatgaggacagtggcgtgttgttgtataaaggggacaatgatcacattgcc
atggagctgtacaggggacgcctcagggtcagctacgatacaggatcataccctccttcc
gctatatacagtgtggagacagtgaatgatggcatcttccatgctgtagagttggtggcg
tcagaccagactttgtctttgtcaatcgacggcgggacgcccaaatccatcaactccctc
agcaaacagtccaccctcaacatagattctccactctaccttggaggaatgccagaacgt
gcctcagggtctgggggtccctcgtccctgcagcacagctcaggtggtcgtaacggcacc
agcttccacggctgcctccgtaacctgtacatcaacgggaagctccaggacctgggggcc
gggctgggctcgggggctctgggctccacagcggcacagagcaccagcagacagtggctg
ggccaaggggtggagccaggctgccagccctgtcagagaggggcctgcgtccagggcgac
tgccacccgacgggacatcgaggcttcacctgcacctgccacccgggctggacgggaaca
gtgtgcgacgagcaagtcaacaacccatgtgatggcaacaaatgtatacatggcacctgc
cttccaatcaactcctactcgtattcctgccgctgccagcctggtttcgctggagtactt
tgcgacgagcaggaccaggacacagctaacccctgcagtatgtcacactgtaaacatggc
aaatgtagagtgtcaggcctggggaaggcatactgcgagtgtaacagcggatatacaggg
gacgcgtgcgacagagaggtggcctgcagaggggaacggatccgagatgtctaccagaga
cagcaaggctacgcggcgtgccaaacccaggagaaggtctcccgcctagagtgtcggggc
agctgcccggggggagcagaaggacagggcacctgctgcacccccctccgcagcaaacgc
aggaaatacaccttccagtgcactgacggctcttcttttgtccaggaagtggaaaaggtg
gtcaaatgtggctgtacaaagtgttcctcataa
DBGET
integrated database retrieval system
