Pseudochaenichthys georgianus (South Georgia icefish): 117445133
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Entry
117445133 CDS
T09629
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo02010
ABC transporters
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117445133 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117445133 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pgeo02000
]
117445133 (abca7)
Transporters [BR:
pgeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117445133 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
117445133
NCBI-ProteinID:
XP_033936450
LinkDB
All DBs
Position
4:18808985..18839010
Genome browser
AA seq
2388 aa
AA seq
DB search
MEFFQKLGLLLWKNITYRRRNKIQLIIELLWPLFLFVILIAVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFHSLTPGETVGQVGNFDNSILSRLFVDAQKVLSYSGNQR
FPGFQDLMGSVQRLGERPGAWPNIPVEEYLRANETFSSFLLTNGSLSSVTVSQLLKARLN
FQVVLAGSELQLKDLVCNASMLGRFLTVEGGEAAMNDLQTQLCNVSADVLKEVERIFLSQ
LDLPKLLTRERLMANAEDLRDISLAVMSVSQEMAVLIDDFSSLSSFADMSAALSLLSPAN
RSALPRESFRAFSRIMCGHPEIGGERIPSLNWYEDNDIKSFLGKNGTEDKDLDHDNNTTP
FCKSLIHGLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVQEVMNEVNKPFEDLQILQELN
EAWMEVGPRVKYYMENSLEMQLLQDLLKRPEVAVLVNLRLENTTWTATRIARFLSTPPPG
TPKRPGAPPNWLDIYNNLGHTISTLSQVSECFSLNKLEGLDTEGQMVDRALELLEGRQFW
AGVVFLLPNSSSPNLPPHVKYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGF
VYVQDLVERAVNRILTGVQQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLGTGTLWLSWFISSIVPFLVSAGLLIAMLKVGDILPYS
NPLVVFFFLTAFATATIMQCFLISTFFSKANLAAACGGLIYFGLYLPYVLCVAWRDRLTT
TYKVIASFLSPVAFGFGCEYLSQYEEQGVGIQWYNLYSSPVQGDSYSFTTSIVMLYADAF
IYATAAWYIEAVFPGEYGIPRPWYFIFQINYWGGIPLEAGMPIPPAPVGQDGDHIEPEPD
NLVMGVSVRNLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYIKGMDIRHDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEAEVKAEMD
TLLEDVGLLHKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCYGSPLFLKSHLGSGYYLTVVKRE
GLETSTPSSTSICTSNSTSTSTSTSKLPPLKDSESSMSEDTGLGSEESNSYLAALLSLAQ
QHIPGARLVEESGREAVFNLPQAAAKDSSLAVFLAELDQRLSELGVSSYGLSDSTLEEIF
LRVAEETGVDADPELQAESPSRQQPSAGQRVERQDAEEPETGRKRLRKQEPQETDLLSGD
GRGGVPLTGWWLTWQQLRALFIKRWLYARRSRRGFFAQIVLPAVFVLIALLFSLIVPPFG
KYPSLQLQPWMYGEQFTFFSNDAPGNPAMENLLEALLDQPGFGTKCMEREDNSTIPVCED
ERGGLFMRPQLSYDTWEMFSRGNWSRHKPSPDCQCSTEDVRRMLPDCPKGAGGLLPPQKK
RLTGDTLQNLTSYNISDYLVKTYSQILKKSIKTKKWVNEFRYGGFSLGGSSSQTLSQVHH
VQDSVTAIRTQYRVPQNSSLDHLLNRLPDFLGGLHSQNNVKVWYNNKGWHSMVSFVNVMN
NGLLRASLDPGPERRKYGITAYNHPLNLTKEQLTEMAMMTTSVDVLVSICVIFAMSFVPA
SFVLFLIEERVSKAKHLQFVSGVKPILYWLANFSWDMLNYTVPATMVVLIFICFQQQSYV
SETNLPALILLLLLYGWSITPLMYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLEL
FVDEHLNEVNRILKKVFLIFPHFCLGRGLIDMAKNQAMSDAFQRLGTKQTLDPLQWDFVG
KNLFAMAVEGLIFFIFTILLQYKFFINFRPWWSEPEVPPLGPEDEDVARERERVISGKAQ
SDILTMVDLSKVYKAGKMPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTSITYG
EAFLNQHSVTTEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVSEESVAKVAQWG
VTKLGLAQYSEREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCIV
SVTKEGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLMDN
ISEPASCPISSFMQSSFPSIELKERHQSVLQFQLPSHACCLARVFEVLANNHEELGIIDF
SVSQTTLDQVFVNFAKEQTDDDVLTDVIISNSTVQTKLTTLVNRVNPPTILPLPPITPPQ
PSKSPQQPAKSSGRKPKEGKSKKPKSGIVKSKEGKANGEKSSSMAMTQIPQKEEKAQRTS
RRASGGSDSSSSGAQGESSQSSKRKAESSSQDPSALFMVDGNTQDSVL
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atggagtttttccaaaagcttggcctcctgctctggaagaacatcacataccgcaggagg
aacaagatccagctgatcatcgagctcctctggccgctcttcctcttcgtcatcctcatc
gctgttcgccattcacaccctccctacaaacagagccaatgtcatttcccaaacaaagcc
ttgccgtcggcaggcaccttgccctggatccagggcattatctgcaacatcaacaacccc
tgcttccacagcctgaccccgggggagacagtgggacaagttggcaactttgacaactcc
atactgtctcgtctctttgtggacgcccagaaggttctgtcctacagtggaaaccagaga
ttccccggctttcaggacctgatgggcagtgtccaaaggctgggagagagacctggagcc
tggccaaatattccggtagaagaatacctgagagccaatgagactttctcctccttcctc
ctgaccaatggcagcctgtcgtctgtgactgtgagccagttgctgaaagctcgcctcaat
tttcaggttgttttggctggatccgagttgcagctgaaggacttggtgtgtaatgcgagc
atgctgggacgttttctgacggtggaaggaggagaagcagccatgaacgatcttcagact
cagctgtgtaacgtgtcagctgacgtcctgaaggaggttgaacgcatcttcctctctcag
ctcgatttgcccaagctgttaacgagagagcgtctgatggctaacgccgaagacctcagg
gacatcagtctggccgtcatgtccgtttcccaggagatggccgtcctcatcgatgatttc
tcctctctctccagctttgctgacatgagtgcagctctcagtcttctatctccagcgaat
cgctcggcgttgcccagggagagttttcgtgctttttcaaggatcatgtgcggtcaccca
gagattggtggtgagcgaatcccttcactcaactggtatgaggacaatgacatcaagtcc
ttcttaggaaaaaatggcaccgaagacaaagacctggaccatgacaacaacacaactcca
ttctgtaaaagtttgatccacggcctggagtccaaccctctgtctcgcattgtgtggcga
gggataaaacctctgtttattggaaaactgctgtacacaccagacactcctgcagttcag
gaagtcatgaatgaggtgaacaagccctttgaggacctgcagatcctccaggagctgaat
gaagcctggatggaagtggggccgcgagtcaagtattacatggagaacagtttggagatg
cagctactgcaggatttgttgaagcgtccagaggtcgcagtactggtcaacctgagacta
gagaacacgacctggacggccactaggatcgctcgtttcctgtccacgccccccccaggc
accccgaagagacccggagcgcctcctaactggctggacatctacaacaacctcggccac
accatctccaccctctcacaagtctctgagtgtttctctctgaacaagctggaggggttg
gacactgaaggtcagatggttgacagggcgttggagcttctagagggccggcagttttgg
gcaggtgttgttttcctgcttcctaactcctcatcccctaacctgccgccccacgtgaaa
tacaaaatccgaatggacattgatgatgtgacccggaccaacaagatcaaggacaggttt
tgggaccctggtccagcagccgacccttttaatgatatgcgctacatctggggtggcttt
gtgtacgtccaggacctggtggagagagcggtgaaccgcatcctgaccggagttcaacaa
acaaccggcatctacatccagcagatgccctacccctgctatgtggatgatgttttcctt
cgagtgctgaaccgctctctgccactcttcatgacgctggcctggatctactcggtggcg
atgatcatcaaaggcgtagtgtacgagaaggaggcgaggctgaaggaaaccatgaggatt
atgggtctgggaacgggaacgctgtggctcagctggttcatcagcagcattgttcctttc
ctggtctctgcagggctcctcatcgctatgctaaaggtgggggacatcctgccgtacagc
aacccacttgttgtgtttttcttcctgacggcgtttgccaccgccaccatcatgcagtgt
ttcctcatcagtaccttcttctctaaagccaacctggctgctgcctgtggagggctgatc
tacttcgggctgtacctgccgtacgtactgtgtgtagcctggagagaccgcctcaccacc
acctacaaagtcatcgctagctttctgtcccctgtggcctttggcttcggctgtgagtat
ttatctcagtatgaagagcagggcgtaggcatccagtggtacaacctctactccagccct
gtgcaaggagactcgtacagcttcaccacctctatagtcatgctctatgcggacgccttc
atctacgccactgcagcctggtacatcgaagcagtgtttcccggagaatatgggatcccc
aggccctggtacttcatcttccaaatcaactattggggaggaattcctctggaggcaggc
atgcccatcccccccgcacctgtaggacaggatggagatcacattgaaccggagcccgat
aacctggtcatgggtgtgagtgtaagaaacctggtgaaaatctacaagaaaggagccaaa
ctggccgtcaatcacctgaacctgaagttctacgaggggcagatcacttccttcctcgga
cacaacggagcaggcaaaaccaccaccatatcggtcctgactggcctgttcccacctacc
tcgggcactgtctacattaagggaatggacatccgccatgacatggacatcatccggagg
acactgggagtttgtccacagcacaatgtcctgttcgacatactaacagtggaggagcac
gtttggttttatgggtgtctgaaaggtttatctgaagcagaggtgaaagctgagatggac
actctgctggaagacgtcggcctgctgcacaaacgacatgaacagaccaaaaacctctct
ggtggcatgcagaggaagctgtctgtggcgatcgcgtttgtcggaggctcgaaggtggtt
gttctggatgagcccacagcaggggttgatccttactcccgcagagggatctgggatttg
ctgctcaaatatagaaaagaccggaccatcatcctgtccactcactacatggatgaggca
gagctgttaggcgatcggatcgccatcatctctcaggggaagctgtgctgctatggctca
ccactcttcctgaagtcccaccttggatctggctactacctcactgtggtgaagagggag
ggactggaaaccagcactcccagcagcaccagtatctgcaccagcaacagcaccagcacc
agcaccagcaccagcaagctgcctcctctcaaggacagtgaatcatccatgagtgaagac
accggcctgggaagtgaggagagcaactcatacctggcggcgctgctctccctggcgcag
caacacatccctggggcgaggctggtggaggagtcggggcgcgaggcggtgttcaacctg
ccgcaggccgctgccaaggacagcagcctggccgtcttcctggccgaactggaccagagg
ctgagcgagctgggcgtcagcagctacggcctgtcggacagcactctggaggagatcttt
ttacgagtggctgaggaaacaggggtcgatgctgacccagagctgcaggctgagtctccc
agcaggcagcagccgtcagccgggcaacgggtggagaggcaagatgctgaagagccagaa
acaggaaggaaaaggcttcgtaagcaagaacctcaagagacggacctgctgagtggagat
ggccgagggggggtcccgctgacgggctggtggctgacctggcagcagctcagggctctc
ttcattaaacgctggctttatgctcgaaggagccgcaggggcttctttgctcagattgtg
ctgccggctgtgttcgtgctgatcgccctgctgttcagcctcatcgttcctccctttggg
aagtatccctccctgcagctgcagccctggatgtacggggaacagttcaccttcttcagc
aatgatgcacctgggaacccggccatggagaacctactggaagctctgctggaccagcca
ggttttggtaccaaatgcatggagagagaggacaacagcacgattcctgtgtgtgaagac
gagcgggggggcctgttcatgcggccgcagttatcttatgacacctgggagatgttcagc
agaggcaactggagcagacacaaaccgtctcctgactgtcagtgtagcacagaggacgtc
cggcggatgctccccgactgcccgaagggggccgggggtctgctgcctccacagaaaaag
aggctgactggagacaccctccaaaatctgacaagttataacatctctgattacctggtt
aaaacctactctcagatcctcaagaaaagcataaaaaccaagaagtgggtaaatgaattc
agatacgggggtttctccctggggggcagctccagtcagaccttatctcaggtgcatcat
gtccaagactccgtcacggccatcaggactcaatatcgagttccgcagaacagttcactg
gatcatttgctaaacagactgccagattttctaggaggactgcacagtcaaaacaatgtc
aaggtgtggtacaataacaagggatggcattcaatggtttcatttgtcaacgtgatgaac
aacggcctgctgagagcgagtctggaccccgggccagagaggaggaaatacggcatcact
gcctacaaccacccgctcaacctcaccaaagaacaactcacagaaatggctatgatgacc
acatcagtggacgttctagtttccatctgcgtgatctttgccatgtcctttgtgccggcc
agctttgtccttttcctgattgaagagcgagtcagcaaagccaaacaccttcagtttgtc
agcggagtcaaaccgatcctctactggctggccaacttcagctgggacatgttgaactac
accgtcccggccaccatggtggtgctgatcttcatctgcttccagcagcagtcgtacgtc
tctgagaccaacctgccggctctcatcctgctgctcctgctctacgggtggtccatcacc
cctctgatgtacccagcatcctttctgttctccgtgcccagcacagcctacgtggtcctg
acctccatcaacctcttcatcggaatcaacggcagcattgccaccttcgtcctggagctg
tttgttgacgagcatctgaacgaggtgaacaggatcctgaagaaggtgtttcttatcttc
cctcatttctgcctgggacgaggactcattgacatggccaaaaaccaagccatgtccgac
gccttccagagactgggcacaaagcagactctggaccctcttcagtgggactttgtaggg
aagaacctgtttgccatggcagttgagggtcttatcttcttcatcttcaccatactgctg
cagtataagttcttcattaatttcaggccgtggtggtccgagcctgaggtgcctcctctt
ggtccggaggacgaagacgtggccagggagagagagagggtgataagtggcaaagcccag
tcagacatcctaaccatggtagacctgagcaaggtttataaagcaggcaagatgccggca
gtcgatcgtctctgcctcgggattcctcgtggagagtgttttggcctgctgggggtgaac
ggcgcaggaaagacctccacctttcgcatgctgaccggagacacaagcatcacctacgga
gaggctttcctgaatcaacacagtgtgacaacagagatggagcgagtgcaccagctgatg
ggttactgtccgcagtttgacgccatcagcgacctgctgacgggtcgggaacatctggag
ctgtacgcccgcctgcggggagtttcagaggagtctgtcgccaaggtggcgcagtggggc
gtgacgaagctgggactggcccagtactctgagcgggaggcgggaggatacagcggaggc
aacaagagaaagctctctaccgccatctccctcatcggagctccgcctgttatattcctg
gatgagcccaccactggcatggacccaaaagccaaaaggtttctgtggaactgcatcgtc
agcgtcaccaaagaggggagggctgtagtcctcacctcacacagtatggaggaatgtgag
gctctctgcaccagaatggccatcatggtgaacggcagattccagtgtcttggatctgta
caacacttgaagaacaggtttggtgatggctacaccattgttctccgtctgatggacaat
atatcggagccggcctcgtgccccatcagcagcttcatgcagagctctttccccagcatc
gagctgaaggagcgccaccagagcgtgctgcagttccagctgccctcacacgcctgctgc
ctggctcgggtcttcgaggttctggccaacaaccacgaggagctgggcatcatcgacttc
tcggtttcacagaccactctggaccaggtgtttgtcaactttgccaaagagcagacggat
gacgacgtcctcactgatgttatcatcagcaacagtacagtacagaccaaactgaccact
ttggttaacagggttaaccctcccaccatccttccactgccgcccatcactccccctcag
ccgagcaagagcccgcagcagcccgcaaaatcatctggcagaaaacccaaggaggggaaa
tcaaaaaagcccaaatctggcatagtgaaatctaaagagggcaaagctaatggggagaag
agcagcagcatggcaatgacacaaatacctcagaaagaggagaaggctcagaggactagc
cggagggccagcggtggatcagacagcagttctagtggagctcagggagaaagtagtcaa
tccagtaaacgcaaagcagagagctccagtcaagatccatctgcactgttcatggtcgac
ggcaacacacaggacagcgtactgtga
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integrated database retrieval system
