Pseudochaenichthys georgianus (South Georgia icefish): 117445140
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Entry
117445140 CDS
T09629
Symbol
fxr1
Name
(RefSeq) RNA-binding protein FXR1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117445140 (fxr1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117445140 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
117445140 (fxr1)
mRNA cycle factors
Stress granule specific factors
117445140 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
FXR_C1
Tudor_FRX1
KH_1
Agenet
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
117445140
NCBI-ProteinID:
XP_033936468
LinkDB
All DBs
Position
4:complement(26339187..26355938)
Genome browser
AA seq
711 aa
AA seq
DB search
MESPLLPPHVSPGASRSTCRPDILCVSNMEELVVEVRGSNGAYYKGVVKDIHDDSLTIAF
ENNWQPERQVPFHDVRMPPHADCKKEIGEGEEVEILSRANDQEPCGWWLAKVCMMKGDFY
VIEYAACDATYNEIVTFERLRPINANKAITKNSFIKCTVPVPQDLQEACQNDGAHKEFKK
AVGACRITYCPETSELVIVSTNEATVKRVSLLSDMHLRSIRTKLLLMSRNHEATKHLETS
RQLVSSFQEEFMVRTDLMGLAIGSHGSNIQQARKVPGVSAIDLDEETGTFRIYGETAEAV
KKARNYLEFLEDFVEVPRALVGKVIGKNGKVIQEIVDKSGVVRVRIEGDKDNKQPRPEGM
VPFTFVGTKESIGNVQVLLEYHISYLNEVEELRLERMQIDEQLRQVTQGHRPGDRERGER
GGGGGYNTDGSANASSSSLHGSRSYNGQGRGRRGHGYSTGYGTNSEQSNASETDSERRDE
LSDWSLAADDQDRERERGSRPQRDSRRRPGPGRGRGGPGGRGRGGRGGYSNSSAGPRDHD
DNSAYRVAEANTETDQTADTDASESNLPANRRRRSRRRRTDEETTLMDGMSESDNTSMSE
NGIDDSEAKPQRRNRSRRRRARLPEERQPVSVADYISRADSQSREMTTTKDTNKNKDVGQ
VDAIAEDSPPSAPATTNGSNNNAGDGERNKTPAKVSYQGDCNPQPVANGLS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggagtcacctctcctgcctccacacgtctcccccggtgcctcaaggagcacctgtcgt
cccgacatcctttgcgtgtccaatatggaagaactggtggtggaggtccgtggctccaac
ggggcttattacaagggcgttgtcaaagatatccacgatgactctctcaccattgccttt
gagaacaattggcagccagagcgccaggttcccttccatgatgtcaggatgccaccgcac
gctgactgcaagaaggagattggagagggcgaggaggtggagatcctctccagagccaat
gatcaagagccttgtggttggtggctggctaaagtctgcatgatgaagggagatttttac
gtgatagagtatgcagcctgcgacgccacctacaatgagatcgtgacctttgagcgtctg
cgtccgatcaacgctaacaaggccatcaccaagaactcctttatcaagtgcactgtccct
gttcctcaggatctacaagaagcgtgccagaatgatggcgcccataaggagtttaagaaa
gccgtgggagcctgtcgcatcacatactgccctgagaccagcgaactcgtgattgtgtct
accaatgaggcgacagtgaagcgtgtgtccttgctgagcgacatgcacctgcgcagcatc
aggaccaagctgctgctgatgtcacgcaaccacgaggccacaaaacacctggagacctcc
aggcagctggtgtcgtccttccaggaggagttcatggtcagaacggatctgatgggcctg
gccatcggcagccacggcagcaacatccagcaggcgcgcaaagttccaggagtctctgcc
atcgacctggatgaggagactggaactttcaggatttatggagagacagcggaggctgtg
aagaaagccaggaactacctggagtttctggaggactttgtcgaggtgcccagggccctt
gttggcaaagtgatcggtaagaacgggaaggtcatccaggagattgtggacaagtcgggt
gtggtgagggttaggatagaaggagacaaggacaacaagcagccccgaccggaaggaatg
gtgccattcacatttgtcggaactaaggaaagtatcggcaacgttcaggtcttgctggag
taccacatctcttatctcaatgaggtggaagagctccgtctggagaggatgcagattgat
gaacagttgcgtcaggtcacccagggtcaccgcccaggtgacagagagaggggggaaaga
ggaggaggaggagggtacaatacagatggcagtgccaacgcctcctcttcctctttacat
ggcagtcgctcttacaatggtcaagggcgcgggcgcagaggccacggctacagcaccgga
tatggcaccaactctgagcagtccaacgcctctgagacagactcagagcgcagggatgag
ctcagcgactggtccctggctgcagacgatcaggacagggagagggagagaggctcccgg
ccacagagagacagccgcaggaggcccggacccggcagaggcagaggagggcctggaggt
cgggggagaggaggaagaggaggatacagcaacagctctgccgggcctcgcgaccatgac
gataacagtgcctacagagttgcggaggcaaacactgagacagaccagactgctgatacg
gatgcaagcgagtccaacttgcctgcaaaccgacgcaggagatcccgaaggcgcagaaca
gacgaggaaaccactctgatggacggcatgagcgagtcagacaacacctcaatgagcgaa
aatggaatagatgactcagaagctaaacctcagcgtcgtaaccgtagtcgacgtcgccgc
gcccgcctgcctgaggagaggcagccagtgtcagtggctgactacatatcccgggctgat
tctcagagcagagagatgacaaccaccaaggacaccaataaaaacaaagatgtgggtcag
gtggatgccattgctgaggacagcccgccgtcggccccggcaactaccaacggctctaac
aacaatgctggagacggtgagcgcaacaagactcccgccaaagtctcctaccaaggggac
tgcaacccacaacctgtcgctaacgggctctcctag
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