Pseudochaenichthys georgianus (South Georgia icefish): 117445143
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Entry
117445143 CDS
T09629
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117445143 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
117445143 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117445143 (smx5)
03041 Spliceosome [BR:
pgeo03041
]
117445143 (smx5)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117445143 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
117445143 (smx5)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117445143 (smx5)
Complex C
U2 snRNP components
117445143 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
117445143
NCBI-ProteinID:
XP_033936474
LinkDB
All DBs
Position
4:44085256..44088101
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AA seq
134 aa
AA seq
DB search
MFGTSGALARRSPSSVIAISRGVKRHQHQTHIQNTPIAIMLFYSFFKSLVGKDVVVELKN
DLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQL
LQDAARKEAMQQKQ
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcacatctggcgccctcgcgcggcgctcaccctcctccgtcatagcaatatca
cgcggggtgaaacgtcatcaacaccagacgcacatccagaatacaccaatagcaataatg
ctcttctactcgttcttcaagtcgctggtggggaaggatgtggttgtggagctcaaaaac
gacctgagtatctgcggaacacttcattctgttgaccagtacttgaacattaagctcaca
gacatcagtgtcactgatccagagaaatatccacacatgctgtcagtgaaaaactgtttc
atccgtgggtctgtggtccggtacgtgcagctgcccgctgacgaggtggacacgcagctc
ctgcaggacgcggcgcggaaagaagccatgcagcagaagcaatga
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