Pseudochaenichthys georgianus (South Georgia icefish): 117445541
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Entry
117445541 CDS
T09629
Name
(RefSeq) slit homolog 2 protein-like
KO
K06260
platelet glycoprotein V
K28877
leucine-rich repeat-containing protein 15
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117445541
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pgeo02000
]
117445541
04090 CD molecules [BR:
pgeo04090
]
117445541
Transporters [BR:
pgeo02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
117445541
CD molecules [BR:
pgeo04090
]
Proteins
117445541
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_9
LRR_LRWD1
LRRNT
Adenovirus-41_E3
TMEM154
Motif
Other DBs
NCBI-GeneID:
117445541
NCBI-ProteinID:
XP_071059077
LinkDB
All DBs
Position
4:12097389..12116778
Genome browser
AA seq
1270 aa
AA seq
DB search
MDSLFRGTLWTILILFTLPHLTCNMLCPGSCLCNSMGSVKCVGDAITDIPHNLPVQTYLL
QLNGTQMNIINERSLADKDLLLRFSLTYSHLHAIHPNAFHVAPQLKSVKLSSNNLSTISA
RVFSPLATLEQLYLDGNQLETIAPDMFEGLVSLLYLDLSRNKLTSPASDVFDGLTKLTFL
NIGRNSINKLPPTIFHSLTNLLQLMIYNNDLEELEAGIFDKLVNLVELKIHQNQITILPP
QVFWSLKNLKTLTLSSNRLQAIPEKTFYNMPKLTKLTIYNNPLLSLPDQLMGHMPDMTDL
YLYATNLTTVPGNVFANMSGLLRLNFHLNDKLRELPSDLFCCLPKLEKLSLKSNDLLYLH
PQLFSGLTTLGILLLNDNKLKSLPDNIFQGLGGVLTVDLKNNHLETLSGDTFLSNSVLKA
LHLGGNPWDCTCSIRGIAKWIRKHQHVVLDGQDVMCHSPVYQMLRSIGSLQDEEFNFCDA
KILKSSYLFTTQTPVVASTTTMPTTMPTTMPTTMPTTMPTTMPTTMPTTMPTTMPTTMPT
TMPTTMPTTMPTTMPTTTSATTECTTQQVTILTTTPTTKPPPSTILSTMLQTPTTNEPNE
EFLPNTEKPSSHYKSANFYDTLLIEEGPEFVHHNLHKGWVYVWFLPSNAALTGLLMFCYI
LLVAAGLFLIFAAVFCMYRLNNIMDKLKAQCAHPPEKKMDLPLKLEVLLLLCSFHTVVWA
CPDGCLCQGTQIYCSGLSGFPTSVPSGTTATYLSNCSIYSLKPEDLTDFSDALEIFFMKD
TVLREVRTGTFDLSPNVGVLGFTTTELQDLPEALFQNLPKLKSLNLKSNKLMVLRPNWFS
TLAELQLLDLSKNLFTSVPVETFHPLAELQILLFSGNNISHLPRDTFKGLSKLKTLRLNK
NSLQEIPLGSLDDLGELEELSLHDNLITHLHQDLFSKTLKLQKLYLSNNRLRSLPQGIFL
NLPILSQISLYENQLESLEPGVFGPMALQELWLYDNKLSHVEDDTFRNLTQLRLLVLSRN
QISSVSTRAFGGLEQLGEVSLHTNLLTTLQAGTFQDLPSLVNISLEHNLISTLPLGFLQG
VSNLGQIDLQNNSLLNLPQESLDGLSSAKEVLLQQNPWRCDRDILPLRNWLKQHPSKANQ
TLVVCEAPLNLNGEVIALLEDKNFLSFGSTEAPVLTSTEKRRKPQTPPARLSTSSPVAKT
TAASESGSEEVTSGGQGEKDTVSNDNSIILILIAVVATVIISTVIIGFVCWRKNKRGRGN
IGRRNKNSVL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggattctctcttcagaggcaccctgtggaccatactcatcctcttcacactgccacac
ctcacctgcaacatgctgtgccccggcagctgcctgtgtaacagtatgggttccgtcaag
tgtgttggcgacgccatcacagatataccacataatctgcccgtccaaacgtacctgctg
cagcttaatggcactcaaatgaacatcatcaatgagcggagcttggctgacaaggacctg
ctgttgcgttttagtctgacatacagccacttacatgctatccatcccaatgccttccac
gttgctccacagctcaagtctgtcaagctgtcgtccaacaatctctctaccatctctgct
cgggtcttcagtccgttggcgacactggagcaactgtatttagatgggaaccagttggag
accatagctccggatatgtttgaaggactagttagtttgctgtatctggacctgagccgg
aacaaactgaccagtcctgcttcagatgttttcgatggactgaccaaactcaccttcctg
aacattggcaggaactccataaataagcttccaccaaccatcttccactccttgactaat
cttctccagctcatgatctataacaacgacttggaggagctagaagctgggatttttgat
aaacttgtcaaccttgtggagctaaagatccaccaaaaccagattaccatccttccccct
caggtattttggtcactgaagaaccttaagaccctcaccctctcctccaaccgacttcag
gctatcccagaaaagaccttctacaacatgccaaagctgacgaagctcaccatttacaac
aacccgctattatctttaccagaccagctaatgggtcacatgcctgatatgacagacttg
tatctgtatgctactaatctcaccactgttcctggaaatgtgttcgcaaacatgtcagga
cttttgaggcttaacttccatttaaacgacaagctgagggagttgccttcggacctcttc
tgctgccttcccaagctcgagaagctgtcattgaaatccaacgacctcctttatctacat
ccccagctgttctccggactaaccacacttggcatactgcttctcaatgacaataagttg
aagagtctcccagataacatctttcagggccttggaggggttttgacagttgatttgaag
aataaccatctcgagactctttcaggagatactttcttgtcaaattcagttttgaaggct
cttcatctgggtggcaacccctgggactgtacttgtagtattagaggtattgcaaaatgg
ataagaaaacatcagcatgttgttcttgacggacaggatgtgatgtgtcatagtcctgtg
taccaaatgctccgtagcattggctctctgcaggatgaggaattcaacttttgcgatgct
aagatactcaaatcaagttatttgttcaccacacaaacaccagttgttgcttcaaccacc
acaatgcccaccacaatgcccaccacaatgcccaccacaatgcctaccacaatgcccacc
acaatgcctaccacaatgcctaccacaatgcccaccacaatgcctaccacaatgcccacc
acaatgcccaccacaatgcctaccacaatgcctaccacaatgcccaccacaacatcagcg
accactgaatgcactacccaacaagtcaccatccttacaaccactccaactacaaaacca
ccaccctccaccatcttatccacaatgctccaaactcccaccaccaacgagcctaacgag
gagtttcttcccaacaccgagaagccctcgtctcattacaagtcggctaatttctatgac
acactgttgattgaagaggggccggagtttgttcaccacaaccttcacaagggctgggtg
tacgtgtggtttctgccctcgaatgcggccttgaccgggctactcatgttctgctatatc
cttcttgtggctgcaggcttgttcctcatttttgctgccgtgttttgcatgtatcgcctc
aacaacatcatggataagctcaaggctcagtgtgcacatcctccagaaaagaaaatggac
ctgcccctgaagcttgaagtgctccttcttctctgctctttccacactgttgtttgggcg
tgcccagatggatgcttgtgtcaaggaacccaaatctactgcagcgggctctcaggcttc
cccacgagtgtgccctcaggaaccacagccacctacctctccaattgcagtatctactcc
ctgaaaccagaggacctgactgatttttctgatgcacttgagatattttttatgaaagac
acagttttaagggaagtacgcactggcacctttgatttatctccgaatgtgggtgtctta
gggtttactacaactgaattacaagatctccctgaagccttgttccaaaatcttccgaaa
ctcaagtctctgaatctgaagagcaacaagctcatggtactccgccctaactggttttcc
acgttggcagagctacaactccttgacctcagcaaaaatcttttcacttctgtacctgta
gaaacttttcaccctcttgctgagctgcagatccttcttttttctggaaacaatatcagt
catctacctagagacacattcaagggtctttcaaagctgaaaaccttacggcttaacaaa
aactctctacaggaaataccccttggaagtttggatgaccttggagaactggaggaacta
tccctacatgacaatctaatcactcatctccatcaggatctgttctccaagactttgaaa
ctccagaagctgtacctctccaacaacaggctcagatctcttccacaagggatcttctta
aacctgcccattctttcccagatctccttgtatgaaaaccagctggagagtctggagcca
ggagtgtttgggcccatggccctgcaggagttgtggctgtatgacaacaaactgagtcat
gtggaggatgacacattcagaaacctgacacagttgcgtctcctggtcctcagtcgcaac
cagatcagctctgtatccaccagggccttcggagggttggagcagcttggagaggtatca
cttcacactaatctgctcacaacactgcaagctgggactttccaagatctgccgagtctg
gtcaacatttctttggagcataacctcatcagcaccctacctttgggatttctccagggc
gtgagtaacctgggacagatagacctgcaaaataactcccttctcaatctgccacaagag
agtctagatgggctcagttcagcaaaggaggttctcttgcagcagaacccctggaggtgt
gacagggatattctaccacttagaaactggctgaaacagcacccatccaaggccaaccaa
acgcttgtggtgtgtgaagcacctttaaatctgaatggcgaggtaattgctctgctggag
gataagaacttcctgtccttcggctctacagaggcccctgtgttgacctccacggagaag
aggaggaaaccacagactccaccagcgagactaagcacttcctcacctgtagccaagacc
accgctgcctcagagagtggcagtgaggaggtcaccagtggtgggcaaggggagaaggat
actgtttctaatgataactcaatcatcctcatcctcatcgcagtagtagctactgtcatc
atcagcactgtcatcatcggctttgtgtgctggaggaagaacaagagaggcaggggaaat
attggccgcagaaacaagaactctgtgctgtag
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