Pseudochaenichthys georgianus (South Georgia icefish): 117445553
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Entry
117445553 CDS
T09629
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03460
Fanconi anemia pathway
pgeo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
117445553 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117445553 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117445553 (her6)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117445553 (her6)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
117445553 (her6)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
117445553 (her6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
Spectrin_1st_PEPL
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
117445553
NCBI-ProteinID:
XP_033937187
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All DBs
Position
4:14477559..14479326
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AA seq
278 aa
AA seq
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MPADMIEKNSSSPVAATPASMNTTPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALNTDPTVLGKYRAGFSECTNE
VTRFLSTCEGVNTEVRTRLLGHLGSCMGQINAMNYPSQHQQHQHQLPPTGGPTHPSFGQS
MVQIPNSPQQILPMNTVSCKGGSSPGNLSPDATKVYGGFQIVPANDGQFAFLIPNAAFAP
NGPVIPVYANNVGTPVPVPAAVSPGVPSGNTDSVWRPW
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgatatgattgaaaaaaactcatcctctccggtcgcagcaaccccggccagc
atgaatacaactcccgataaacccaagacagcctccgaacacagaaagtcatccaagcca
attatggaaaagaggagaagagccagaatcaacgagagcttggggcagctgaaaactctc
atcctggatgcgctcaaaaaagatagctccagacactctaaactggagaaggcggacatc
ctggagatgactgtgaagcatctccggaacctccagagagctcagatgaccgctgccctc
aacaccgaccccactgttttgggaaaatatcgtgccggtttcagcgagtgcacgaatgaa
gtcactcggttcctgtccacctgcgaaggtgtcaacaccgaggtcaggacgcggctcctc
ggtcacttaggcagctgcatgggccagatcaacgcgatgaactaccccagccagcatcag
cagcaccaacaccaactcccccccacgggcggaccaacccacccctcctttggccagtcc
atggtgcagatccccaactctccccagcaaatcctgcccatgaacacggtgtcctgtaaa
ggaggctcctcgccgggcaatttatcaccagacgccaccaaagtgtacggcggtttccag
atcgtgcctgccaacgatggacagtttgcattcctcatacctaatgcggcttttgcgcca
aacggccctgtcatccccgtgtatgcaaacaatgtcggcacgccggtccccgtcccagct
gcggtgtcccccggagtcccgtcgggcaacacggattcagtgtggcgaccctggtga
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