Pseudochaenichthys georgianus (South Georgia icefish): 117445601
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Entry
117445601 CDS
T09629
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04136
Autophagy - other
pgeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117445601 (atg4c)
04136 Autophagy - other
117445601 (atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgeo01002
]
117445601 (atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117445601 (atg4c)
03029 Mitochondrial biogenesis [BR:
pgeo03029
]
117445601 (atg4c)
Peptidases and inhibitors [BR:
pgeo01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
117445601 (atg4c)
Membrane trafficking [BR:
pgeo04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117445601 (atg4c)
Mitochondrial biogenesis [BR:
pgeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117445601 (atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
117445601
NCBI-ProteinID:
XP_033937245
LinkDB
All DBs
Position
4:complement(22625067..22635421)
Genome browser
AA seq
478 aa
AA seq
DB search
MENKGSDEVETLKTKFVSVWHNVKYSWALKLKTSFSRNSPVLLLGKCYHFKAEDDDSVAE
ACSEACGEDSVVGNAEAFRKDFTSRVWLTYREECPPLPGSTLTSDCGWGCMLRAGQMMLA
QALILHFLGRDWTWSEAMALQPLDTETWTTSAAKRLVASLQGPSRSPEHGPHPPLQSQAP
GSAEEADAHLKEMYHRSLVSWFGDSPSAQLGLHRLIRTGLTMGKQAGDWYGPAVVAHILK
KAVEEAMDPGLAGITAYVSQDCTVYSADVIDSHRAPRAGQPSAERSEAPPNSQSNQPVSA
STLTDSRAVIILIPVRLGGEKTNPDYFNFAKSILSLDYCIGIIGGKPKQACYFVGFQDDS
LIYMDPHYCQSFVDVSTSDFPLQSYHCPSPKKMPFSKMDPSCTLGFYSKSAQDYERISQE
LSKVLQPSAKEKYPAFTFVQGHGRDYDLSAGLTPEKREWPFIRDPRRTVTTTGDFVLL
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggagaataaagggagcgacgaggtggaaacattgaagacaaagtttgtgtctgtgtgg
cacaatgtcaagtacagttgggctctgaaattaaagacctctttcagtagaaattcccca
gtgcttctcctcggaaaatgttaccattttaaggcggaagatgacgacagtgttgcagag
gcctgctctgaagcctgtggtgaggactctgttgtggggaacgcggaggctttccgcaag
gattttacgtcccgggtgtggctcacctacagggaggagtgcccccccctccccggctcc
accctgacctcggactgtggctggggctgcatgctgagagccgggcagatgatgctggct
caggccctcattctgcacttcctgggcagagactggacctggtcggaggcgatggcgctg
cagcctttagacacagagacgtggaccaccagcgcagccaagcgcctggtggcctcactg
caaggaccctccaggtccccagagcatggcccacatcccccgctccagtcccaggccccg
ggatctgcagaggaggcagatgctcatttgaaagagatgtaccaccgctccctggtgtcc
tggttcggggacagcccctcggctcagctcggcctccacaggctgatccgcaccggcctg
accatggggaagcaggcgggggactggtacgggcccgctgtggtggcacacatcctcaag
aaagctgtggaggaggcgatggatcctggcttggcgggtataactgcttatgtctcccag
gactgcacagtgtacagtgctgatgtcatcgatagccatagggcaccaagagcagggcag
ccctctgcagagagatcagaggccccgcccaactcacagagcaaccaaccggtgtcagcc
tccaccctgactgacagccgagccgtcatcatcctcatccctgtgaggctgggaggggaa
aagacaaacccggactattttaactttgcaaagagcatactgagtctggattactgcata
ggcatcatcggagggaagcccaaacaggcctgctactttgtaggatttcaagatgacagc
ttgatttacatggaccctcattactgtcagtcttttgtggatgtcagcaccagcgatttc
cctctccagtcatatcattgcccctcgccaaagaagatgcctttcagcaagatggaccca
agttgcaccttaggtttctactctaaaagtgctcaagactacgagagaatcagccaggag
ctttctaaggtgctgcagccgtcagccaaggagaaatacccggcattcactttcgtccaa
ggtcacggcagagattacgacctgtctgcaggcctgaccccggagaagagagaatggccc
tttatccgtgacccccggaggacggtcaccaccaccggggactttgtgctgctttga
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