Pseudochaenichthys georgianus (South Georgia icefish): 117445855
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Entry
117445855 CDS
T09629
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117445855
03041 Spliceosome [BR:
pgeo03041
]
117445855
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
117445855
Spliceosome [BR:
pgeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117445855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
117445855
NCBI-ProteinID:
XP_033937641
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All DBs
Position
4:complement(1438154..1469881)
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AA seq
543 aa
AA seq
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MDGPGLSLSKLSYSSSEMQFQRGSEELFPSVSSAPYIMSTTANGNDSKKFKGDIRGPGVP
SRVIHIRKLPTDISEAEVISLGLPFGDVTNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTL
VPIIRHHPVYIQFSNHKELKTDNSPNQERAQAALRALTSSHVDGVVVAPSTVLRVVVENL
IYPVTLDALCQIFSKFGTVLRIIVFTKNSQFQALLQYAEGASAQSAKLSLDGQNIYNGCC
TLRISFSKLTSLNVKYNNEKSRDFTRPDLPSGDSQPTMEHPGMTAFTPGIISAGPYGGAA
HGFPPAFTLQPTMSSHYPGLVPGMPGGLAALSLPGASRLGFPHISAGVSVLLVSNLNPER
VTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDCTQAQLAMSHLSGQQLHGKPLRITP
SKHTSVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVED
DLKMLFSTSGAMVKAFKFFQKDHKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSK
SSI
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcctggtctctctctctctaaattaagttactcttcttccgagatgcaattt
cagagaggatctgaagagcttttccccagcgtctccagcgccccgtatatcatgagcacc
acagccaatggcaacgacagtaagaagttcaaaggtgacataagaggccccggcgtgccg
tccagggtcatccacatccgaaagctcccgactgacatcagtgaggccgaggtcatcagc
ctcggtctgcccttcggagacgtcaccaacctgctgatgctcaaagccaaaaaccaggcc
ttcttagagatgaactcggaggaagcggctcagaacatggtgggatattactccacactg
gtgcccatcatcaggcaccacccggtctacatccagttctccaaccacaaggagctgaag
accgacaactcccccaaccaggagagagcccaggcagctcttcgcgccctcacttcctca
catgtggacggggttgtggtggctcccagcaccgtgctgagggtggtggtggagaacctg
atctaccccgtcacactggacgccctctgccagatcttctcaaagttcggcacggtgctg
aggatcatcgtcttcacgaagaacagtcagtttcaggctctgctgcagtacgctgaagga
gcctccgcccagtcagccaaactgtctctggacggacagaacatctacaacggctgctgc
actctgaggatcagcttctccaaactcaccagcctcaacgtcaagtacaacaacgagaag
agccgcgacttcaccagaccggacctgcccagcggggacagccagcccaccatggagcac
ccgggcatgaccgccttcactccaggaatcatctccgccggcccgtacggaggagcggcc
cacggcttcccccccgccttcaccctgcagcccacaatgtcctcccactacccaggtctg
gtccccgggatgcccggaggcctcgccgctctctctctccccggagcctccaggctgggg
ttccctcacatctctgcaggagtctctgtcctgctggtcagcaacctgaacccagagaga
gttacgccccactgcctctttattctcttcggtgtttatggcgacgtgatgagagtgaag
atcctgttcaacaagaaggagaacgctctggttcagatgtccgactgcacacaggcgcag
ctagccatgagccacctgagcgggcagcagcttcacgggaagcccctccgcatcacgccg
tccaaacacacgagcgttcagcttccccgtgaaggccacgaggatcaaggcctgaccaaa
gactacagcaactctcctctgcaccgcttcaagaagcccgggtccaaaaactactccaac
atcttcccgccttctgccaccctccatctctccaacatcccgccgtctgtggtggaggac
gacctcaagatgctgttttccacatcaggagccatggtcaaggccttcaagttcttccag
aaggaccacaagatggctctgatccagatgggctcggtggaggaagccatcgagtccctg
atcgagttccacaaccacgacctgggagaaaaccaccacctccgagtctccttctccaaa
tcctccatctga
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