Pseudochaenichthys georgianus (South Georgia icefish): 117445873
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Entry
117445873 CDS
T09629
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117445873 (frem1b)
04518 Integrin signaling
117445873 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pgeo04091
]
117445873 (frem1b)
Lectins [BR:
pgeo04091
]
C-Type lectins
Lecticans
117445873 (frem1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
117445873
NCBI-ProteinID:
XP_033937678
LinkDB
All DBs
Position
4:45747899..46036462
Genome browser
AA seq
2151 aa
AA seq
DB search
MAAAVRTLLLLAVTAICSGTLVVVNSGVKVTRGRSVFITEMELRINVGPTADCKVEVVMN
EPITQRVGKLTPQVFDCSFLEDEVKYCHNGSPLLDQDTVMLRIYRFTSSDTLVETVVLTV
QVADSGSGVVELGGTPLVVPVFYGLSNSIDGSVLSIRSSADLVCTVRLMSDTSTPALGQL
VRKEDSTQRKGRETASLCQGNQPCLHDTKEVGFLKTSCQEFLSSGLKYQHLSPPSPEIDY
IPIRVELREKGSRALLEAESLWLPVLIHGAMQNQPPQAVFMASFILEVDQFILTPLTTAS
LDAKDPETPQERLVFNITTPPAEGYVTHLDDHTKPVTSFTWLDLHEMKVAYQPPNSSQSQ
RRNHEVEFHVIDGSYITSPPFMVHISIRVAETNAPRVSWNMGLDLLEGQSRPVTWDELQI
VDNDNINAVYLVAVDGPLHGRLSVRGRKAFMFRVGDLREGVVVYHHSDSDTTHDHIVFRI
SDGRHSIRHKFPINILPKDDSPPFLINNVAVEVQEGGAVRLEQLMLLASDLDSSDDYILY
QVTSSPRVGQLLRKTSTQETGDPVESFLQRGLIQGQIYYQHSGEEQFEDSFDFTLSDSHQ
PPYLSQTYTVVVHVFPVKDQLPVEVSGSIRSLTVRETEVVHVTQAHLHFTDREHPDTDLS
YVITQPCINPLHPGLMDAGRLFYTDTTNSMKKNHMVPVLKSFTQHAVNHGKVAFMPPVED
IGPDPLFLQFVFSVSDHHGGTISDLVFNITVIPVDDQAPEAFTNLLRVEEGGGAFVTEEH
LLVQDRDSWEEVLRAEVQRTAGHGRLELQGRTLLQGHTFTLQDLRERRLRYIHDDSETTE
DEVHLKVTDGLNSADVVLAIQVLQMNDEPPQLGGGLRGELSCQERGRIQVTVDYLSATDR
DSENSRLMYMLARRPGRGELQRDGLSVDKFSQQDLLQGHVYYVHTGGEIGPDPVVDIITL
IISDGEAGGTDGCCYGDAPPPPVPLHGTLPVCDLNITILPVNNEVPSITLGASMLMVDEG
SSSCLCVGVLAASDPDSPPDQLTFHLETPPLHGYLENTQPTPGSEKSNVGVRVESFSLVH
LTMGLINYVQSESKGVEPTIDQLSISVSDGLHRSAPVPFYIIISPTNDETPSLLLTNFTV
NEGGMRELTPSILNGFDLDSPLDTLTFTVVQPPAHGSLINGIYSLEKSRYSDTGAELLQR
SLPITSFTLQELQQGMKIVYMHDDTETLQDAVALRLTDGVHTVQGRARVTVLPLNDERPR
LLRNAGLEVDPGERRVISSRALEAEDPDNPPQQLFYCLIAAPRFGKLQIKKESAWSELSA
GQNFTQDDVEMNRLWYAHTAATNAAGFKGHDSFRFTLSDLDNETPAQSFFINVHTVQKGE
LLLLSRGGHLTEGQRLVLNTNILLAWDSSGHPEELVYTLSAPPRHGLVHGVQQPGVPLAS
FTQLDIAAHRVCYTHDNSHHADTDSFSFVVTNGASSRSGTLHFTIEHGDRIPPTLNHNTG
LRLQDGSTETISPAQMQLTDPDTATSNLSFVITQPPGHGRLLLRGVPLFPPLGFTQTDVD
QLNLDYQHQLGSLADIDRFYFLPTDGTNIGYLEFGQLREEPAVFNIQVDRVDRLPPSLST
RRIPSTVVGLGGGRYGIFITSKHLQASDPDSPVEDLEFSISRPPQFGYLENTLTGAYIKG
CFTQRDVNQRAVAFILPADMEVTADSFQFLLTDPAGNTMLPQILELSWSRVELSATCYRT
CETVGTLQIHIQRSGGSADPAYVAIQVEEGSAKPGRDFTHSTAALIQFDPGVSVKTWNIY
LIDDGLEENHETFTVTLKNAKNAVLGQRTSASVEIIDPRGGRCNPDDLMVDERLPTAPPP
AQLPDPPRVKEEDSVTDIEAELLWENQPHPPQGDVPNRRPYLDYREGESKDQTAPHSQRS
SPSTGSSGSSVPRVMHRGLKYKAGPFGPFDPSADVQVQLSGGRRSEEKVWTFHSLSPLRL
EELKPGDAGRSWSPDSPPLQDPPQMDHPEPRHNPELRPRKTGKSVSSRCAEGWTHYRRRC
YTVSLSVASWASAERSCSMLFNSSLTGVNSRRDMTWLWKFAGRKPFWIGLSGGPGRWMWA
DGQSVSFSRLSGETLLGSDCVLVENPRSWFSTSCSPETQHTFICSSQDRTH
NT seq
6456 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgtccgcacgctattgctgctggcggtgacagccatctgcagcgggact
ctggtcgtggtgaactcgggcgtgaaggtcaccagaggtcgatcagtgtttatcacagag
atggagctgaggatcaatgttggtccgactgcagactgtaaggtggaggtggtgatgaac
gaaccaatcactcagagggtggggaagctgactccacaggtgtttgactgcagctttcta
gaggacgaggtgaagtactgccacaatggaagtcctctgctggaccaggacaccgtgatg
ctgagaatctacaggttcacgtcctctgacacgctggtggagaccgtggttctgacagtg
caggtggcagactctggatctggtgttgtggagctcggtggcactccgctggtggttcct
gtgttctacggtttatccaactccatcgatggctctgtcttaagcatccggagctctgca
gacttggtgtgcaccgtcaggctcatgagcgacaccagcacccccgctctgggtcagctg
gtgaggaaggaggactccacccagaggaaaggcagagagacagcttcactctgtcaggga
aaccaaccctgtctccatgataccaaggaggttggttttctgaaaacaagctgtcaggaa
ttcctgagctccggcctgaagtaccagcacctcagccctccgtcaccagagatcgactac
atccccattagggtggagctgagggagaaggggagcagggctctgctggaggcagagtcg
ttgtggttaccagttctgatccacggtgccatgcagaaccagccgcctcaagccgtcttc
atggcctcattcatcctggaggtggaccaatttatcctcaccccgctcaccacggcctct
ctggatgctaaagaccctgagaccccgcaggagaggctggtctttaacataaccaccccc
cccgccgagggctatgtcacccatctggatgaccatacaaagcctgtcacgtccttcacc
tggctggacctacacgagatgaaagttgcataccagccacccaacagcagccaatcacaa
cgcaggaaccacgaggtggaattccatgtaatagacgggtcctacatcaccagcccgccc
ttcatggtccatatttccatcagggtggctgaaacaaacgcacccagagtctcctggaac
atgggtttggacctgctggagggtcagtctcgaccggtcacctgggacgagctgcagata
gtagacaacgacaacatcaatgcagtgtacctggtggctgttgacggaccgctacatgga
cgccttagtgtcagaggtaggaaggcattcatgtttcgtgtcggggatctgagggagggt
gtggttgtttaccatcactccgacagtgacaccacccacgaccacatcgtcttccgcatc
agcgacggccgtcacagcatccgccacaagttccccatcaacattctgcccaaagacgac
tccccgccctttctcatcaacaacgtggcagtggaggtgcaagaaggtggtgccgtgagg
ctggagcagttgatgctgttggcctccgacctggactccagcgacgattacattctgtac
caggtgacctccagccctcgggtggggcagctgcttaggaagacctccacccaggagaca
ggagatccagtggagagtttcctgcagagaggtctgatccagggtcagatctactaccag
cactcaggagaggaacagtttgaggactccttcgacttcacgctgtctgacagccaccag
ccgccctacctctcccagacatatacggtggtggtccatgtgttcccggtgaaggaccag
ctgccggtggaggtctccggcagcattcgctccctgacggttagggagacggaggtagtt
catgtcactcaggctcacctccacttcaccgaccgtgagcatccagacacagacctgagc
tacgtcatcacacagccctgcatcaacccgctgcatcctgggctgatggatgcgggacgt
ctgttctacacagacaccaccaacagcatgaagaaaaaccacatggtgccggtgttaaag
tccttcacacagcacgcagtgaaccacgggaaggtggccttcatgcctccagtagaggac
atcggcccagatccactgtttctccagtttgtcttctccgtcagcgaccaccatggtgga
accatctccgaccttgtcttcaacatcaccgtcatccctgtggacgaccaggcgccagag
gctttcaccaacctgctgcgggtggaggagggtggaggggcctttgtgactgaggagcat
ctcctggttcaggaccgggacagttgggaggaggttctgagggccgaggttcagagaacg
gctggccatggcaggctggagctgcagggccgcacgctgctgcaaggacacaccttcacc
ctgcaggacctgagggagcgcagactcaggtacatacacgatgactctgagaccacggag
gatgaagtccatctgaaggtgacggacggcctgaactcagctgacgtcgtcctggcaata
caggttctgcagatgaacgatgaacctccccagctgggtgggggtctacggggggagctg
agctgccaggagcgggggcggatccaggtcacggtggactacttgtcggccacagatcgg
gacagcgagaactccaggctgatgtacatgctggctcggaggcctggcaggggggagctg
cagagagacgggctgagcgtggacaagttctcccagcaggacctgctgcagggacacgtc
tactacgtccacactggaggagagattggacctgatccagtggttgacatcatcaccctc
atcatctctgatggggaggccggaggaacagacggctgttgctacggagatgcccctccc
ccaccagtgcctcttcatggtacacttcctgtgtgcgaccttaacatcaccattcttcct
gtcaacaatgaagtcccatctatcactctgggtgcgtccatgttgatggtggatgagggc
tcttcttcctgtctttgtgtcggggtcctggcagcctcagaccctgacagcccccccgat
cagctgacctttcacctggagactcctcccctgcacggctacctggaaaacacccagccg
acgccaggctccgagaagagcaacgtaggagtccgagttgaatccttcagtcttgtccac
ctgaccatgggtttaatcaactacgtccaatcagaaagcaaaggggtggagccaactatc
gaccagctgtccatcagtgtaagtgatgggttgcaccgctccgcccccgtccccttttac
atcatcatcagtccaaccaatgatgaaacgccttcccttctgctcaccaacttcacggtg
aacgagggcgggatgagggagctgactccgtctattctgaacggttttgatctggactcc
cccctggacaccctgaccttcacggtggtgcagccgccggctcacgggagtctgatcaat
ggcatctacagcttggagaagagccgctactcggacacaggagcggagctgctgcagagg
agcctccccatcacctccttcaccctgcaggagctccaacaaggcatgaagatcgtgtac
atgcacgatgacacagagaccctgcaggacgcggtggctctgcgactgacagacggtgtc
cacacagtgcaggggagggccagggtcaccgtgctgccactgaacgatgagaggccacgg
ctgctgagaaacgctgggctggaggtggaccctggtgagcgcagggtgatctccagccgg
gctctggaggcagaggacccggacaaccccccgcagcagctgttctactgcctaatcgct
gcgccacgcttcggaaagctacagataaagaaggagtcggcttggagcgagctgtcagcc
ggtcagaacttcactcaggacgatgtggagatgaaccgtctgtggtatgctcacactgcc
gccacaaacgcagcagggttcaaaggtcacgacagcttccgcttcaccctcagcgacctg
gacaacgagactccggcacagagcttcttcatcaacgtgcacactgtgcagaaaggtgag
ctgctgctgctcagcaggggggggcatctgacggaggggcagcggttggtcctgaacacc
aacatcctgctggcgtgggactcttcgggccatccagaggagctggtctacacgctgtcg
gcccccccccggcatggcctggtccacggcgtccagcagccgggcgtccctctggccagc
ttcactcagctggacatagccgcacatcgagtgtgctacacccacgacaacagccaccac
gcagacacagactccttcagttttgtggtcaccaacggcgcctcgtcccgcagtggaact
ctgcacttcaccattgagcacggtgaccgcatcccaccaaccctcaaccacaacacgggc
ctccggctgcaggatggctccacggagaccatctcacctgcccagatgcagctcaccgac
cccgacaccgccacctccaacttgagcttcgtcatcacgcagccgccaggccatggcaga
ctgctgctgagaggagtccctctgtttcccccactggggttcacccaaacggatgtggac
cagctgaacctggattaccaacaccagctgggcagcctggcggacatagacaggttctac
ttcctgccgaccgacgggaccaacattgggtacctggagtttggacagctgagggaggag
ccggctgtctttaacatacaggtggatcgtgtggataggttaccgcctagtctgtccacc
aggcgaattcctagcactgtggtgggtctaggcgggggccggtatggcatcttcatcacc
tcaaaacacctgcaggcctccgaccctgacagccccgtggaagatctggagttctccatc
agcaggcctccgcagttcggctacctggaaaatactctcacaggagcatacatcaaaggt
tgtttcacgcagcgggacgtgaaccagcgagccgtggccttcatcctccctgccgacatg
gaggtgacggcggacagcttccagttcctcctcactgaccctgctggaaacaccatgcta
ccccaaatactggagctgtcctggtcccgggtggagctgtcggcaacctgctacagaacc
tgcgagacggtgggaacgcttcagatccacatccagcgcagtggggggagcgccgacccg
gcatacgtcgccatccaggtggaggaaggttcggctaaaccggggagagatttcactcac
agcaccgctgctctcatccagtttgacccaggagtgagtgtgaaaacctggaatatttac
ctgatagacgacggtctggaggaaaaccacgagactttcactgtcaccctgaaaaatgca
aaaaatgctgtcctgggacagaggacgtcagctagtgtcgagatcattgaccccagagga
ggaaggtgtaatcctgatgacctaatggtggatgagcgactccctactgccccccctccg
gctcaactccctgacccccccagagtgaaggaggaggacagcgtcacagacatcgaggca
gagctgctgtgggagaaccagccccacccccctcaaggagatgtccctaaccgccggccc
tacctggactacagggagggggaatcaaaagatcagacggccccccacagccaaagatcc
tcccccagcactgggagttccgggagctctgtacccagggtcatgcatagaggattgaag
tacaaggctggtccgtttggtccgtttgacccttctgctgatgttcaggtccagctgtca
ggagggaggaggtctgaggagaaggtctggacgttccacagtctgtctcctctccggctg
gaggagctgaagccgggtgatgctgggagaagctggtcccctgacagtccccccctgcag
gatcctcctcagatggatcatccagaacccagacacaacccagagctacgtccgcgcaag
acggggaagtccgtgagcagccggtgtgctgaaggctggactcactacaggaggcgctgt
tacaccgtcagcttgtctgtggccagctgggccagcgcagagaggagctgctcaatgctg
ttcaacagcagcctgaccggcgtgaattccagaagagatatgacctggctatggaagttt
gcagggaggaagccgttttggatcggtctgtctggaggtccgggtcgctggatgtgggct
gacggtcagtcagtctccttctccagactgagcggggagacgctgctgggctcagactgt
gtgctggttgaaaaccccagaagctggttctccacaagctgctcccccgaaactcaacac
acattcatctgttcctcgcaggatcgtactcactga
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