Pseudochaenichthys georgianus (South Georgia icefish): 117445902
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Entry
117445902 CDS
T09629
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04020
Calcium signaling pathway
pgeo04144
Endocytosis
pgeo04510
Focal adhesion
pgeo04540
Gap junction
pgeo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117445902 (pdgfra)
04020 Calcium signaling pathway
117445902 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117445902 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117445902 (pdgfra)
04540 Gap junction
117445902 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117445902 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pgeo01001
]
117445902 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
pgeo04090
]
117445902 (pdgfra)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
117445902 (pdgfra)
Protein kinases [BR:
pgeo01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
117445902 (pdgfra)
CD molecules [BR:
pgeo04090
]
Proteins
117445902 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
117445902
NCBI-ProteinID:
XP_033937733
LinkDB
All DBs
Position
4:complement(11427007..11444763)
Genome browser
AA seq
1470 aa
AA seq
DB search
MDGVKASLVFGGMLVVGLLVSVTSGLSPPTIVSNEEEFVLQPNSVFNISCTGKRNVVWTE
PLPKNTFVYPGYYTATLFIYNATVENTGYYMCTYQTQEGDLEDEPEEDNEAGIYVFVPDA
LAPFVPETPENLVVPMETDGVPISCRVSDPNSHVTLRSVPSGEDMSAFYDHKMGFFGSLV
PGQYQCETSVNGHSIRSVIYTVETEVPAEMDNFDVEVKASEETVRAGQSFNITCVAPIGL
DFQQQWLHPKKQAMGAVQIKETSLDGVIYTLSIPKATSQDSGSYECSVTHIISGEVRVSS
VAVTVFEENCFVAVDHSGIQTSEFVSLLEETEYTILINAYPNPKVSWLKDGKAMPQTYYI
FAKTSHLEGNRYQSILTLRQPLVKDNGNYTITAISGSRTAHFSFTLKVKAPTAMMFPPSS
GPVLLPQVEEMVVPLHTPFTLTCRGEAKLDWATPLVVHEQTQEDNSGLFVTTITVDNASA
MHTGYYTCFYARNTTEDTEDSSIYVYVPDPDVPFVTSLVPFGNHVLSDQEEMEIQCRVSD
PSANVTLVNVDTQLPVPSFYDSKRGALGVFTAGTYVCKALVNGEERDSEEYIVHGWTGGA
ALHVELTAKRTALLVGETITVNCLARGSEILEDHWKYPGILANRAIKTVHENKRDQEILY
TLTIQKASIKDNGIYSCSITDIISDDIQIKELAIRVFASRFLSITPEFGEYESAELDEVR
EFRAEISAFPSAHVTWLKDGIPLSDVTAEITTSLRQLSETSYLSVLTLIRAKEEDSGNYT
IRVENGEHIRDVGLNLEVKVPAVILDLMDIHHGSAKGQAVVCITRGQPTPVVEWFVCKNI
KHCANDSSSWVPLPANSTGITMDSRFDEENNLESQVTFGHLESTLAVRCLARNEMAAVSR
EVKLVSNGPHPELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEY
IYVDPMQLPYDSRWEFARDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT
ARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNHLHKNRES
FISLNPEKSKKEMDIFGINPVDESSRSYVILSFESKGDYMDMKQSDNTQYVPMLEMNNAS
KYSDIQKSDYDHPPSKKEGEMDDLMSEDINEGLTTTDLLSFTYQVAKGMEFLSSKNCVHR
DLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTSLSD
VWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGFRMSKPEHAPEDVYEMMMKCWNSEP
EKRPTFLGLSETVSTLLPSNYKKHYERVNHDFLKSDHPAVTRVCVENDDAYIGITQKNQC
KLKDRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYGKRNRHGSQTSDESAIETGSSISTY
AKREGETLEDITLLDEMCLDCSDLGEDSFL
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtaaaggcctctctcgtctttgggggtatgctggtggtaggcctactggtt
tcagttacttccggactgtcgccacctaccattgtttccaacgaagaagagttcgtcctg
cagcccaattccgtgttcaacataagctgtaccggtaaaagaaacgtcgtttggactgaa
cccctgccgaaaaacaccttcgtttacccgggatactacacggcgacacttttcatttac
aacgcaactgtagaaaacaccggctactacatgtgcacctatcaaacacaggagggtgac
ctggaggacgaacccgaagaagacaatgaggccggaatatatgtcttcgtcccagatgcc
ctggctcccttcgtcccagaaacccctgaaaacttggtagtcccaatggagacagatggg
gtccccatctcttgccgtgtgtcagaccccaactcccatgtcaccctgaggagtgtcccc
agtggagaggacatgtctgccttctatgaccacaaaatgggcttctttggaagtctcgtg
cctgggcagtaccagtgtgaaacctcagtgaacggccactctatcagaagtgttatttac
actgtggagactgaggtccctgctgagatggacaattttgacgtggaagtaaaagccagt
gaggagacggtgagagcagggcagtcctttaacatcacgtgtgtcgctcccattggactg
gactttcagcagcagtggctccatcccaaaaaacaggctatgggtgcagttcagataaag
gaaacctctcttgacggggtcatctacaccctcagtatcccaaaagccacctctcaggac
agcggcagctacgagtgctccgtcacccacatcatcagcggcgaggtcagagtcagcagt
gtggctgtcacggtctttgaagaaaactgctttgtggcagtggatcacagcgggattcaa
acatcagaatttgtcagcctcttagaggagacagagtataccatcctcattaatgcctac
ccaaaccctaaagtgtcgtggctgaaagacggcaaagccatgccacagacctactacatc
ttcgccaaaacaagccacctcgaaggaaatcggtatcaaagcattctgacattacggcag
cctttggtgaaagacaacgggaattataccatcacagccatcagtggctctcgcactgct
cacttctcctttaccctcaaagtgaaagctcccactgcaatgatgttcccaccatcctcg
ggccctgtgctgctgccacaggtggaggagatggtggtgcccctccacactcctttcacc
ttgacctgtcggggagaggcaaaactagactgggctacgccgctggttgtgcacgagcaa
acacaagaagacaacagcggcctttttgtcaccaccatcactgtggacaacgccagtgca
atgcacactggctactacacctgcttctacgccagaaataccactgaggacacagaggac
agcagcatctacgtctatgtgccagatccagacgttccctttgtgacctccttggttcct
tttggcaaccatgtgctgtcggaccaagaggagatggagattcaatgccgggtgtctgat
cccagtgctaacgtgaccctggttaacgttgacacccagctacctgtgcccagcttttat
gacagcaagaggggcgctttgggagtattcactgctgggacctacgtctgtaaggctcta
gtgaacggagaggaacgcgacagcgaggaatacatcgtccacggctggacaggtggcgct
gcactgcatgttgagctgacagccaaacgcactgctctacttgtgggagaaaccatcaca
gtgaactgtctggctaggggatctgagattctggaagaccactggaaataccctggaata
ctggctaatcgtgctatcaagacagtgcatgagaataagagggatcaggagatcctttac
accctgacaatccaaaaggcctcaatcaaggacaacggcatctactcctgctccatcact
gatatcatcagtgatgacatccagataaaggaactagccattcgagtttttgcaagtagg
tttttgtccatcacaccggagttcggggaatatgaatcggcagagctggatgaggttcgg
gagttcagggctgaaatcagtgctttccccagtgctcatgtcacctggctgaaggacggc
atcccactgagcgacgtgacggcggagatcaccaccagcctccggcagctcagcgagacc
agctacttgagtgttcttaccctgatccgggccaaagaggaggacagcgggaactacacc
atccgagtggaaaatggagaacatattcgtgacgtcgggttaaacctggaggtcaaagtt
cctgcagttattctggacctgatggacatccaccatggctcagccaaaggtcaggctgtg
gtgtgcataaccagagggcagcccactcctgtggtggagtggttcgtctgcaagaacatc
aaacactgtgccaatgactcgtcttcctgggtgcccctccccgccaactccacggggatc
acaatggattcgcgctttgacgaggaaaataacctggagagtcaagtcacgtttggtcat
ctggaaagcacgctggcagtgcgctgcctcgccaggaacgaaatggccgccgtcagcagg
gaggtcaaactggtgtccaatggccctcacccagagctgactgtagctgctgctgtgctg
gtgctcctggtcattgtcatcatctcactcattgtcttggttattatctggaaacagaaa
ccacggtatgagatccgctggagggtcatagagtctgtgagcccagacggccatgagtac
atctatgtggatcccatgcagcttccctacgactccagatgggaattcgcccgtgacaga
cttgtgctcggtcgtatccttggctctggagcctttgggaaggtggtcgagggcactgct
tacggactcagccgctcgcaacctgtcatgaaggtggcagtgaaaatgctgaaacccacg
gcgcgctccagtgagaaacaggccctgatgtctgaactgaagatcatgactcatcttgga
ccacatctcaacattgttaacctcctgggagcgtgcaccaagtcaggccctatctacatt
atcactgaatactgcttctacggggacctggtcaaccatctgcacaagaacagggagagc
ttcatcagcctgaacccagagaaaagtaaaaaagagatggatatctttggaatcaaccca
gtggatgagagcagcaggagctatgtgattctgtcctttgagagcaaaggagactacatg
gatatgaagcagagtgacaacactcagtatgttcccatgctggagatgaacaatgcctcc
aagtactcagacatccagaaatctgactatgaccaccctccgtctaagaaagagggcgag
atggacgacctgatgtcagaggacattaacgagggcctcaccaccacagatctgctcagt
tttacttaccaagtggccaaaggcatggagttcctgtcttccaaaaattgtgtgcatcgg
gacctcgccgccaggaatgtcctcctctctcagggcaagatagtgaagatctgtgacttc
ggactggcccgagacatcatgcatgacaacaactatgtctccaaagggagtactttcctg
ccagtgaagtggatggcgccagagagtatttttgacaacatgtacaccagtctcagtgat
gtttggtcatacggcatcctgctctgggagatattctccttaggtggcaccccataccca
gggatggtggtggattcaagcttctacaacaagatcaagagtggattcaggatgtccaaa
ccagagcacgcacctgaggacgtgtatgagatgatgatgaagtgctggaacagcgagccg
gaaaagaggccgactttccttggtctgagtgaaactgtttccactttgctgccctccaac
tacaagaagcattatgagagggtgaaccacgacttcctgaagagcgaccaccccgctgtg
actcgggtttgcgtggagaacgacgacgcctacatcggcatcacccaaaagaaccagtgc
aagctgaaggacagggaaagcggcttcgatgagcagcggctgagctctgacagcggctac
atcatccccctgccagacctggaccccttatctgacgatgaatatggaaagaggaacaga
cacggctctcagacctccgacgagagcgccattgagacgggctccagcatctctacttat
gctaagcgcgagggtgagactctggaggacatcacgctgttggacgagatgtgtctggac
tgtagtgacctgggggaggacagcttcctctga
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