Pseudochaenichthys georgianus (South Georgia icefish): 117446094
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Entry
117446094 CDS
T09629
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
KO
K14966
host cell factor 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03083
Polycomb repressive complex
pgeo04980
Cobalamin transport and metabolism
pgeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117446094 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
117446094 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117446094 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117446094 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446094 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
pgeo03029
]
117446094 (hcfc1a)
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117446094 (hcfc1a)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
117446094 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
117446094 (hcfc1a)
MLL-HCF complex
117446094 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
117446094 (hcfc1a)
Mitochondrial biogenesis [BR:
pgeo03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117446094 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
117446094
NCBI-ProteinID:
XP_033937984
EnsemblRapid:
ENSPGEG00000022996
LinkDB
All DBs
Position
5:6879989..6900680
Genome browser
AA seq
1709 aa
AA seq
DB search
MSAPGSTASVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNT
ATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLK
AKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSV
VGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDTLTWNK
PSVNGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSN
CWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETERP
HAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPATASAAMISSPVQPLNSL
KGPALAVAAPSAQNLPQTAILKVAAQQSGTGTSIVTVRPSQPGKSPVTLTSLPPGVRMVM
PAQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSGGTLLNVPVGATILKTVAMSPGTTT
MKMASPLMVSNPATRMLKTAAAQVGTATGSSPTNTRPIITVHKSGAVTVAQQAQVVTTVV
GGVTKTITLVKSPLTMGGSGTLISNLGKMMSVVQTKPVQTSISGQASNNPLTQLLQSKGP
LPAGTILKLVTSADGKPTTIITTSQAGGTGHKPTILNISGVSPNTTKQGTTIIKTIPMSA
IMGQSGAAGLNSRVTSSGGMKTPITILTTKVMSAGTPSKFITTVPKLTTAGQQGLTQVVL
KGAHGQPGTILRTVPMSTVGGVRLVTPVTMSSVKPNVTTLVVNRTTGVTTFGTVTGTVSS
SLAGAVADSSNASLVTPITTLGTIATLSSQVISPASITVSAAQTSMTSATTLSSSTMTVQ
NQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSSEAGASGDGSGTVCSNPPCETH
ETGTTNTATTASAAMGAGQVCSNPPCETHETGTTNTATTASSNMSTPRMCSNPPCETHET
GTTNTATTASSSMGGVQKVCSNPPCETHVTGTTNTSTQSSSNMSTGQASSSAQRVCSNPP
CETHVTGTTNTSTQSSSNMSTGQTSSSAQRVCSNPPCETHETGTTNTPSTATSSMGGDQS
SAEGGPVQRVCSNPPCETHETGTTNTATTATCTMETGEGQQTEEGAESTTSTEVDPTTAA
TSTVTTTTTTQGRAITTVTQSTPAPGPSVPSISSISAGSPEEPMQTDETASAEAAPAGEG
ASAMETQAEGEAAAATALNLPSELMAEAQGATLMVTGLSDEELAVTAAAEAAAQAAATEE
AQALAIQAVLQAAQQAVMNEASGEIQQPTTIPIMLTQQELAALVLQQQQLQQLQLQEAQA
VAQQASAEANLPTEGLAPADSLNDPSVESNGHNEMAAAVTSAVASLLPRTTAETLAPSST
FAPSVSVASPAKLQAAAALADVANGIEGSKQAPQPTPVKAVVKKDNQWFDVGIVKVTNMV
VTHFYMPGDDSQGDDDSGNMPDYSQMKKMELQPGTAYKFRVAGINACGRGSFSEISAFKT
CLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSNQTAEAKASTPAQL
AFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKD
AASAKPAPKRPGTSPDTKAAGPKKARTDQ
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggctccacggcgtcggttctgcagccgcggtggaagcgggtcctcgga
tggtccggtcccgttccccggcccaggcatggacacagagctgtggccataaaggaactt
atggttgtcttcggtggtggaaacgaaggaatagtggatgaattgcatgtgtacaacact
gcaacaaaccagtggtttatcccagcggtccgtggtgatattccccccggctgtgctgca
tatggttttgtatgtgatggcacacgattgctggtgtttggtggaatggtggagtatgga
aagtacagcaacgatctctatgaacttcaggccagcagatgggaatggaaaaagttgaaa
gcgaaaaacccgaagaatggcccccctccttgtcctcgtctgggccacagtttttccctg
gttggcaataaatgctacctgtttggtggacttgccaatgacagcgaggacccaaaaaac
aacattcccagatacctaaatgatctgtacacacttgagctgcgtgcgggatccagtgtg
gttggatgggatattccgatcacatacggagtcctgcctcctccgcgtgagagccacact
gctgtggtctacacagaaaagacgagcaggaaatctcgcctgataatctacggaggcatg
agtggttgtcgccttggagatctgtggacacttgatatagataccctgacatggaacaaa
ccatcagtaaacgggacagcaccgctacccagaagtcttcactctgccaccaccatcaca
aacaagatgtatgtttttggaggatgggttccattggtaatggatgacgttaaagtggcc
acacacgagaaggagtggaagtgcacaaacactctcgcctgcctaaatctagactccaat
tgttgggagaccgtgttgatggatactcttgaagacaacatccctagggcccgtgccggc
cactgtgccgtggccatcaattcccgactctacgtctggagtggccgcgacggttatcgc
aaagcgtggaacaaccaagtctgttgtaaagacctctggtacctggaaacggagcggcca
catgctcctgcccgggtgcagctagtccgtgccaacacaaactctctcgaggtcagctgg
ggcgccgtctcaaccgccgacacctacttactgcagctgcagaagtacgacatcccagca
actccagctacagcctctgcagctatgatttccagccccgtgcagcctctgaactctctg
aagggccctgcactagctgttgcagctccttctgcgcagaatctcccccagacagccatc
ttgaaggttgcggctcaacagtctggcactggcacatctattgtcacagtccgccccagc
cagcccgggaaatcccccgtcactctgacatccctcccgccgggtgtaaggatggtcatg
cctgcccagaccacccaaggatcgccaattggaagtagccctcagatgagtggcatggca
gctttagctgctgctgctgcagcaacacagaagatcccgccctctggtggcactctcctc
aatgttcctgtcggagccaccattctcaaaactgtagccatgtcccctggcacaaccaca
atgaaaatggcatctccactcatggtcagtaacccagccacccggatgctgaagaccgct
gcagcccaggtgggaacagctactggttcctctcccaccaacaccagacccatcatcact
gtgcataagtctggagcagtcactgtggcccagcaggcccaggtggttactacagtggtg
ggaggagtcaccaagaccatcaccctggtcaaaagtcccctcaccatgggcggcagtggc
actctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagccagtgcagacg
tctatctcaggccaggcctccaataaccctctcacacagctcctacagtcaaagggtccc
ctcccagccggcaccatccttaagctggtgacctccgcagatggtaagcccacaaccatc
atcacgacctcccaggcaggaggcactggacacaagcccacgatcctcaacatcagcggg
gtctctcctaacaccactaagcagggcaccaccatcattaagaccatccccatgtctgcc
atcatgggccagtctggagctgcaggtctaaactcacgtgtgacgagcagtggaggcatg
aagacgccaatcaccatcctcaccaccaaagtgatgagtgcaggaactcccagtaaattc
atcaccaccgtgcccaaactcaccactgccggacaacagggactcacacaggtcgtcctg
aagggtgctcatggacaacctggcactatcctgcgcacggtgcctatgagcacagtcggt
ggtgttcgacttgtgacaccagtgaccatgtcttctgttaagcccaatgtgaccactctg
gttgtcaataggacgacaggtgtcaccacttttgggacagtcaccggtaccgtctcctcc
agcctggcaggagccgttgcagacagctccaacgcctctctggttacccccatcaccaca
ctgggaaccatcgccaccctgtccagccaggtcatcagccccgcgtccataactgtgtca
gccgctcagaccagcatgacctctgccaccaccctctcttcctccaccatgacggtgcag
aaccagcccacccaggtgactctgatcacaactcccagcggtgttgaagctcagccagtg
caggaccttccagtgtccatcctggcttcccccacctccgagcagcccagctcctctgaa
gccggagcgtctggcgatggctctggcaccgtgtgctccaacccgccctgcgagacccat
gagaccggcaccaccaacacggccaccaccgcctccgctgcgatgggagcaggacaagtg
tgctccaacccgccctgcgagacgcacgaaacgggcacgacgaacacagccacgacggct
tcatcaaacatgtcgacgccacgcatgtgctccaacccgccgtgcgagacccacgaaacc
gggacaaccaacacggccaccacagcgtccagcagcatggggggagtccagaaggtttgc
tccaacccgccctgcgagacccacgtgacgggtaccaccaacacatccacccagtcgtcc
tccaacatgagcacgggccaggcgagctccagcgcgcagagggtgtgctccaacccgccc
tgcgagacccacgtgacgggtaccaccaacacatccacccagtcgtcctccaacatgagc
acgggccagacgagctccagcgcgcagagggtgtgctccaacccgccttgcgaaacacac
gagaccgggaccaccaacaccccgtctacagccacctccagcatgggcggagaccagagc
agcgcagaaggaggcccggtccagagagtgtgctccaacccgccctgcgaaacacacgag
accggcaccaccaacacagccaccacagccacctgcaccatggagacaggcgaaggccag
cagacggaggagggagcagaaagtaccaccagcacagaagtggaccccaccactgcagca
acaagcactgtcaccaccaccaccaccacccagggcagggccatcactactgtcactcag
tccacacccgctcccggaccctctgtaccctcgatctcatccatctcagccggctcccca
gaggagcccatgcagacggatgagaccgcatcagcagaagctgcacctgctggagaagga
gcgtctgctatggagacacaagccgagggtgaagcagccgcagctacagccttgaatctg
ccctcggagctgatggccgaggctcagggtgccacactgatggtgacggggctgtcggac
gaggagctggctgtgactgcagcagcagaggccgctgctcaggcagctgcgacggaagaa
gcccaggcgctcgccatccaggccgtcctccaggcagcacagcaagccgtaatgaatgag
gcctctggagagatccagcagcccaccaccatccccatcatgttgacccagcaggagctg
gcggcgctggtcctgcagcagcagcagctgcagcagctgcagctgcaggaggctcaagcc
gtggcgcagcaggccagcgcggaggccaacctgcccactgagggcctggcccccgcagac
agcctcaacgacccctccgtcgagagcaacggacacaatgagatggcagccgcagtcacc
agcgctgtggcctcactgctgccacgcaccactgccgagacactcgctccttcgagcaca
tttgctccatctgtatcggtggcaagtccagccaagctgcaagcagcagccgccctggca
gatgtggccaatgggatcgagggatcgaaacaagccccacagccaaccccggtgaaggct
gttgtaaagaaagacaaccagtggttcgatgttggaatcgttaaagtgacaaatatggtc
gtcacccacttctatatgccaggagatgactctcagggagatgatgactctggcaacatg
ccagactacagccaaatgaagaaaatggagctgcagcctggcacggcttacaagtttcgt
gttgctggaatcaacgcttgtggccgtggatctttctcagagatatccgctttcaagacc
tgcctaccaggcttcccaggggctccttgcgccatcaaaatcagcaagagccccgatggt
gcccacctgacctgggagccgccctcggtgacgtcggggaagatcatcgagtactccgtg
tacctggccatccagagcaaccagacagccgaagccaaggcctccaccccagcgcagcta
gccttcatgcgcgtgtactgcgggcccaacccctcctgcttggtgcagtcgtccagcctc
tccaacgcccacatcgactacaccaccaagcccgctatcatcttccgcatcgccgcccgt
aacgagaagggctacggccccgccacccaagtccgatggctgcaagaatccggcaaagat
gccgcctctgcaaaaccggccccaaaaagaccaggcacctctcctgatactaaggctgcc
ggtccaaagaaagcgaggacggaccagtga
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integrated database retrieval system