Pseudochaenichthys georgianus (South Georgia icefish): 117446140
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Entry
117446140 CDS
T09629
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117446140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117446140
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446140
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117446140
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117446140
Chromatin remodeling factors
BAF complex
117446140
PBAF complex
117446140
GBAF(ncBAF) complex
117446140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
BRK
Bromodomain
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117446140
NCBI-ProteinID:
XP_033938043
LinkDB
All DBs
Position
1:29156895..29182510
Genome browser
AA seq
1668 aa
AA seq
DB search
MSTPDPPMGSTPRPGPSPGPGPSPGAMLGPSPGPSPGSSHSMMGPSPGPPSGHPQLVPSG
YGQESMHPLHKPMESMHEKSLSEESRFSQMKGLSLRQGVHSGMGPPPSPLDQHSQGYHSP
LGGSDHSSPVPSNGPPSGPLMPSSSSSSGCPGSTPLDGPGVDQHTLGPTNRPGPPGPSPG
PSMGLGVSTLVSGLESGGPPGPGGPGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQ
MAVQGKRPMPGMQQPMQSLVPGGGGGLMGGPAGPILGPGMMGSGYGRVHGMMGPNMPPPV
PSATPVGMQMQNPNGPPKSWPEGPLVNAAAPSNAPQKLIPPQPTGRPSVPPAASPVMPPQ
TQSPGQPAQPTPMMPFHTKQNRITPIQKPCGLDPVEILQEREFRLQARITHRIAELENLP
GSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMHRDTALETALDAKAYKRSKHQSLRE
ARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITGKMQKLTKAVATYHA
NTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVR
AHKAAQALKEKKKKKKKKKKKKKKLESAEGQTPAMGPDGEPLDETSQMSDLPVKVIHVDS
GKILTGVDAPRAGQLETWLEMNPGYEVAPREDSEEEEEEEEEEEEEPQPSANQVEEEKKI
TDPDCEDASEVDVRHIIENAKQDVDDEYSGAAFARSLQSYYAVAHAVTEKVDKQSTFLIN
GQLKQYQVKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGAYLIIVP
LSTLSNWVYEFDKWAPTVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKQVLA
KIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPT
IFKSCITFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEK
VEYVIKCDMSSLQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM
FHQIEESFSEHLGLSGGIVQGLELYRASGKFEVLDRILPKLNATNHRVLLFCQMTTLMTI
MEDYFAYRGFKYLRLDGSTKADDRGMLLKTFNEPGSDYFIFLLSTRAGGLGLNLQSADTV
IIFDSDWNPHQDLQAQDRAHRIGQLNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA
GMFDQKSSSHERRAFLQAILEHEEQDEVGEQEVCLRINEEDEVPDDETVNQMIARSEDEF
DQFMRMDLDRRREEARNPRRKPRLMEEDELPTWIMKDDAEVERLTCEEEEEKLFGRGSRE
RKEVDYSDSLTEKQWLKSVFPMQAIEEGKLDELEEEVRHKKTTRKRKRDRDLDLPGPSSS
LGGRGRGDKDDDGKRQRKRGRPPADKLSPNPPSLSKKMRKIVDAVIKYKDSASGRQLSEV
FIQLPSRKELPEYYELIRKPVDFRKIKEKIRGHHYRSMGDLERDVMLLFQNAQTFNLEGS
LQIYEDSIVLQSVFTSLRQKIEKEEESEGEESEEEEDDLEEGSESESHTVKMKIRLGKKD
KSGDRGKGRSRRTGRNRAKPVVSDDDSEDEQEEERSPSATDEESGIVM
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagatccccccatgggaagcacacctcgcccaggtccttcccctggccca
ggtccttcccccggggctatgctaggccccagcccagggccctctccaggctcctctcac
agtatgatgggccccagccctggccctccctctgggcacccccagctagtgccctctgga
tacggccaggagagcatgcaccctctgcacaaacccatggagagcatgcatgagaagagc
ctgagtgaggagagtcgcttcagtcagatgaagggactgtctctgagacagggcgtgcac
agtggcatgggccctccacccagtcctctggaccaacactcacaaggttaccactctccg
ttggggggctctgaccactccagccccgtcccttcaaatggccccccctctggacctctc
atgccatcctcctcttcctcctctggttgtcccggctctacaccattagacggtcccggt
gtagatcagcacactctgggtcccactaaccggcctggcccacccggccccagtccagga
cccagcatgggccttggtgtctctacccttgtatctggccttgagtctggaggccctcct
ggtcctggaggtcctggtggcccgactcccttcaaccagaaccagctccaccagctcaga
gcccagatcatggcttataagatgctggcccggggtcagcccctgccagatcacctccag
atggctgtccaaggaaagaggccgatgcctggaatgcagcagccaatgcaaagcctggtt
cctggagggggaggcgggctgatggggggaccagcaggacccatactagggccggggatg
atgggttccggctatggccgagttcatggaatgatgggtcccaacatgcctcctccagtc
ccatcagctactccagttgggatgcagatgcaaaacccaaacggacctcccaaatcctgg
ccagaaggccccctggtgaatgcagcagccccctctaacgcaccccagaagctaattccc
cctcagcccactggccggccatcagttcctccagctgcctctccagtaatgcctccacag
acccagtcccccggccagccggcacagcccactcccatgatgcctttccacaccaagcag
aaccgcatcacccccatccaaaaaccctgcggcctcgacccagtggagattctacaggag
agggagttcaggttacaggctcggatcactcatcgtattgctgagctggagaacctgcca
ggctctctggctggtgacctgcgtacaaaagctactattgagctcaaagccctccgactg
cttaacttccagagacagttgcgtcaagaggtggtggtgtgcatgcaccgggacacagct
ctagagacggccctcgatgccaaggcctacaagcgaagcaagcatcagtctctgcgagag
gcgcgcatcacggagaaactggagaagcagcagaagattgagcaagagcgcaaacgaagg
cagaaacatcaggagtacctgaacagcatcctgcagcacgccaaagacttcaaagaatac
caccgatccatcacaggcaaaatgcagaagctgacaaaagcagtggccacctaccacgcc
aacactgagcgggagcagaagaaagagaacgagcgtattgagaaagagaggatgaggagg
ctcatggccgaggatgaggagggctatcgtaaactgatcgaccagaagaaggataagcgc
ctggcctacctgctgcagcagactgacgagtacgtggccaacctcaccgatctggtccga
gctcacaaagctgcgcaggccctcaaggagaaaaagaagaagaagaagaagaagaagaag
aaaaagaagaagttggagagtgctgagggtcagactcctgccatgggtcctgatggagag
cctctggatgagacgagtcagatgagtgaccttccggtgaaggtcatccacgtggacagc
gggaagatcctgacaggggtggacgctcctagagccggacagctggagacctggctggag
atgaaccctggttatgaggtggctcctcgtgaagacagcgaggaggaggaggaagaggag
gaggaggaagaggaggagcctcaaccgtcagctaaccaggtggaggaggagaagaagatt
acagatcccgactgcgaggacgcgtcagaggtggatgtccgacacatcatcgaaaatgct
aaacaggacgtggatgatgaatatagcggagcagcgttcgcccgaagcctccagtcatat
tacgctgttgctcacgctgtcacggagaaggtggacaaacagtccacttttttaataaat
ggacaactcaaacagtatcaggttaaaggattggagtggctggtttccctctacaacaat
aacctgaacgggatcctggctgatgagatgggcctggggaaaaccatccagactatcgcc
ctcatcacgtacctcatggagcacaagcggctcaacggcgcctacctcatcatcgtacca
ctctcaactctttctaactgggtgtatgagtttgacaaatgggcaccgacagtcgtgaaa
gtgtcctacaaggggtctcctgctgcaagaagagcctttgtgcctcaactgcgcagtgga
aagtttaacgttttactcaccacttacgagtacatcatcaaggataaacaagtgctggcc
aagattcgttggaagtacatgattgtggacgagggccaccggatgaagaaccaccactgt
aagctgacccaggttctgaacacacactacctggccccgcgccgtgtactgctcacagga
accccgctgcagaacaaactacccgagctctgggcgctgctcaacttcctgctgcccacc
atattcaagagctgcatcaccttcgagcagtggttcaacgcccctttcgctatgacagga
gagaaggttgatcttaatgaagaggagaccatcttgattatccgtcgtctccataaagtc
cttcgccccttcctcttgcgcagattaaagaaggaggtggaggcccagcttccagagaag
gtggagtacgtgataaagtgtgacatgtcgtctcttcagagagtgctctacaggcacatg
caagccaagggggtcctgctcactgacggatcagaaaaggacaagaagggtaaaggaggc
acaaagacactgatgaacaccatcatgcagctgaggaagatctgtaaccacccttacatg
tttcatcaaatagaggaatctttctctgaacatttaggattatctggtgggatagtccag
ggtcttgaactgtatcgggcatcaggaaagtttgaggtgttggatcgaatcctgccaaag
ctcaacgccacaaaccacagagtgctgctcttctgtcagatgaccactctcatgaccatc
atggaggactactttgcttatcgcggcttcaagtatctgcgcctggatggttccacaaag
gctgatgatagaggaatgttactgaagacttttaatgaaccagggtcagactactttatc
ttcctcctgagcacaagagccggaggcctcggcctcaacctgcagtctgcggacactgtg
attatttttgactctgactggaacccacatcaggacttgcaggctcaggacagagctcac
cgtattggtcagctaaacgaggtgcgagtgctgcgtttgtgcacggtaaacagcgtcgaa
gagaaaatcctggctgctgccaaatacaaactgaacgtggaccaaaaggtcattcaggct
ggcatgtttgaccagaagtcttcgagccacgagcgcagggccttcctacaggccatcctg
gaacacgaggagcaagacgaggtcggggaacaggaagtgtgtctacgaattaatgaggag
gatgaggtgccagatgacgagacggtcaaccagatgatcgccaggagtgaggacgagttc
gaccagttcatgcgtatggaccttgaccgccgtcgtgaggaagcccgtaacccgcggaga
aaacctcgtctgatggaggaagacgagctacccacttggatcatgaaggacgacgctgag
gttgaacgtctgacctgcgaggaggaagaggagaaattgtttggaagagggtctcgagag
cggaaggaggtggactacagcgactcactgacggagaagcaatggctcaagtctgtgttt
cccatgcaggcaatagaggaaggcaaactagatgagttggaggaggaggtacggcacaag
aagaccacccgcaagaggaagagagaccgcgacctggacctccccggtccctcctcttcc
ctagggggacgagggcgaggggacaaggatgatgacgggaagaggcaaaggaagaggggg
cgaccacctgctgataaactctcccccaaccccccctccctctcaaagaagatgaggaag
atcgtagatgctgtcatcaagtataaagacagcgccagtggtcgtcagctgagcgaagtg
ttcatccagctgccgtctcgaaaggagcttccagagtactacgaactgatccgcaagcct
gtggacttcagaaagatcaaggagaagattcgaggacatcactaccgcagtatgggtgac
ctggagcgagacgtcatgctgctctttcaaaacgctcagaccttcaacctggagggatcc
ctgcagatctatgaagactccatcgtcctccagtcagtgtttaccagtctgaggcagaag
atcgagaaggaggaggaaagtgagggagaggagagtgaggaagaggaagatgatctggaa
gaaggttccgagtccgaatcacacacagtgaaaatgaagatccgtttgggaaagaaggat
aaatctggagatcgggggaagggtcgcagcagacgaacaggacgcaacagagccaaaccg
gttgttagtgatgacgactctgaggatgagcaggaagaggagcgttcccccagtgccacc
gacgaggagtccggaattgtaatgtag
DBGET
integrated database retrieval system
