Pseudochaenichthys georgianus (South Georgia icefish): 117446216
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Entry
117446216 CDS
T09629
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117446216 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117446216 (nfasca)
Cell adhesion molecules [BR:
pgeo04515
]
Immunoglobulin superfamily
L1 family
117446216 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_5
Ig_DSCAM-DSCAML_C
Ig_6
Ig_VEGFR-1-like_5th
C2-set_2
BiPBP_C
Ig_C17orf99
DUF3792
SSP160
Motif
Other DBs
NCBI-GeneID:
117446216
NCBI-ProteinID:
XP_033938144
LinkDB
All DBs
Position
5:complement(42502247..42583252)
Genome browser
AA seq
1374 aa
AA seq
DB search
MMRQGGHVALALMSSLLLLWLHAAAIEVPQDPKILQELKQPPTIVKQSVKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCF
SSNDLGVALSNKILLRVSKAPLWPKEVLEPVVVTEGTPLVLPCNPPPGLPPPFTFWMNSA
MSSILQDKRVSMGLNGDLYFSNVLAKDAHNDYSCNARFLFTHTIQQKNPFSLKVQTTEPY
DEASYNATDPYGGRTLAESTPTFLSPSGSESSKMVLRDEQLLLECIAAGLPTPAIKWFKK
GGDLPGRAKIENYNKTLKIINVSEEDAGEYVCMANSHSGSIRHSIFVQVKAAPYWLDKPT
NLVLAPDENGRLVCRANGNPKTNIQWLINGQPIDSSPHNPSRQVQGDTLIFRSVQIGSSA
VYQCNASNEHGYLLANAFVSVLDMPPRMLAPKNQLIKVIQNNRTFLDCPFFGSPLPDLRW
FKNGQGSGLDGGQYRVYVNGTLEIIRARMEDEGTYTCVASSMLGKAENQVRLEVKEPTRI
IRAPEHQSAIRGSTVHLDCKVTSDPSLPVTVSWTKDDKPLHLGWRLKKNEQSLSIPNVNE
GDEGTYSCSVRSEIDEDSASARLTVLEEASLHPSVSSALPPDRPDPPMDLDLSDPAARSV
RLTWIPGNDHRRPITEFLVQFEEDRWESGRWQDLSSYPGDLNSVILQLNPFVNYQFRVIA
INSVGQSTPSRPSPRYKTSGAAPDAIPRGLRGWGSKKDNMEISWEPLLDLERNGPNMHYS
VWWRRKDAGEEWRNVTTAGPKHVVHNTGTYVPYEIKIQARNEFGQGPESNVVTGYSGEDN
PSAAPTDLRVSKADSTKVNLHWGPVDLSSVQGEFKEYRLYYWRESSLVPGLLVSKEKNTK
GFYSVVAEPSGVLSDLVPFSKYKMFMVVANSGFEGPPSNTVEITTKEGVPDAPKFFRISR
RGFDTIHLQWDKPLEPNGLLIGYQLKYQTVNASRVGRHQLETFLPNVTEFSLRLPDRSTR
YKFFLSALTQVGAGEVFAEESPHFTNEDNGTDSTGLVELTEASVDSAFSPTPPPLAPLPP
TTIAPTTISTSTTTTTTSTTTAAPTTTTEATTATARPEPVPTRRPDHNVLVVPGLEICNL
TVEPNSNYANVSWRHNFPVGSSEFVLEFTLDSDKSVNVVPVKQPPITVADLIAGAMYHLR
VYSHELNSISSKSITFKTKAAYIDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGG
KYPGGGCVTGFAKCLVRDKKDMALDAVDHKDQDGSFDYHSDEDNKPLQGSQTSLDGNVKE
SDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKDETEGNESSEATSPVNAIYSLA
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggcagggcggccatgttgccctggctctcatgtcatcactgctgctgctgtgg
ctccacgcagcagccatcgaagttccacaagacccaaagatccttcaggagctgaagcag
ccccccaccatcgtcaaacagtcagtgaaggactacattgtcgaccccagagataacatc
atcatcgagtgtgaggccaagggcaacccagtgccaacgttctcatggcgaaggaacggg
aagttcttcaacattgggaaagatcccagggtgacgatgcggaagcgctcggggacgctg
gagatcggtttccgtagcggcgggcgaccggaggactatgagggggagtaccagtgtttc
tccagcaacgacctgggagtggctctgtccaacaagatcctgctgcgcgtctccaaggct
cctctgtggcccaaagaggtgctggagcctgtggtggtgactgaaggcaccccgctggtt
ctaccctgcaaccccccaccaggcctgcctcctccgttcaccttctggatgaacagcgcg
atgtcttcgatccttcaggacaagagagtgtccatgggtctgaacggagacctgtacttc
tccaacgtgttggccaaagacgctcacaatgactacagctgcaacgctcgcttccttttc
acacacaccatccagcagaagaaccccttctcgctcaaagttcagacaacagagccgtat
gatgaagcatcttacaatgccactgacccctatggtggccggacactggcagagtccacg
cccaccttcctctcaccctcagggagtgagagctccaagatggtgctacgagacgagcaa
ctgctgctggagtgtatcgctgctggactgccgacccccgccatcaagtggtttaagaag
gggggggacctgccagggcgggcgaagattgagaactacaacaagaccctgaagatcatc
aacgtgtcggaggaggatgctggggagtatgtgtgcatggccaacagtcattcaggcagc
atacgccactccatctttgtccaggtcaaagcggctccttattggctggacaaacctacg
aacctggtgctggccccggacgagaacgggcgcctggtgtgccgcgcaaacggaaacccc
aaaaccaacatccagtggctgatcaacggacagcccatagacagctctccacacaacccc
agcagacaggtgcagggggacaccctcatcttccgctcggtacagatcggaagcagcgct
gtgtaccagtgcaacgcctccaacgagcacggctacctgctggccaacgccttcgtcagc
gtgctcgacatgcctccgaggatgctggctcctaagaaccagctgattaaagtcatccag
aacaaccgcaccttcctggactgtcccttcttcggctcccctctgccggacctgcgctgg
tttaagaacggacagggcagtgggctggatggcgggcagtaccgcgtttacgtcaacggc
acactggagatcatacgggccagaatggaggacgaggggacctacacctgtgtggccagc
agcatgctgggaaaggccgagaaccaggtccgcctggaggtcaaagagcccacacgtata
atcagagccccggagcaccagtccgccatccggggctccacggtccacctggactgtaag
gtgacctctgaccccagcctgcctgtcactgtgagctggaccaaggacgacaagcccctc
cacctgggatggaggctgaagaagaacgagcagtccctgagcatccctaatgtgaacgaa
ggcgatgagggcacatacagctgctctgtgagatctgagatagacgaggactcggcctcc
gcccgcctcactgtgctagaggaagcctccctccacccctcagtctctagtgccttgcct
ccagaccgtccggaccctcccatggatctggacctgtcggaccccgcggcccgcagcgtt
cgcctcacttggatccccgggaacgaccacaggagaccgatcacagagttcctggtccag
tttgaggaggaccgatgggagtccggcaggtggcaggacctgtcctcgtaccccggagac
ctgaactctgtcatcctgcagctcaaccccttcgtcaactaccagttcagagtcatcgcc
atcaactccgtgggccagagcacccccagccggccctccccccgatacaagaccagcgga
gcggctccagacgctattcccagaggactgcgaggatggggatccaagaaggacaatatg
gagatcagctgggagcctctgctggacctggagagaaatggccccaacatgcactacagc
gtgtggtggaggaggaaggatgccggggaggagtggaggaacgtgaccacggcggggccc
aaacacgtcgtccacaacacaggaacctacgtgccgtacgagatcaagatccaggccagg
aacgagtttgggcaggggcccgagtccaacgtggtcactgggtactctggggaggacaat
cccagcgccgctcccactgacttgcgggtgtcgaaggccgacagcaccaaggtgaacctt
cactgggggcccgtggacctgagctctgtgcagggggagttcaaggagtaccggttgtac
tactggcgtgagtccagtctggttccaggtctgctggtcagtaaagagaagaacaccaaa
gggttctacagcgtcgttgcagagccatcgggagtcctcagcgacctggtgcctttctct
aaatacaagatgttcatggtggtggccaacagcggcttcgagggtccgcccagcaacacg
gtggagatcaccaccaaggagggggtgccggatgctcccaagtttttcaggataagcagg
agaggtttcgacaccatccaccttcaatgggacaagcctctcgagcccaacggcctcctg
attggttaccagctcaagtaccagacagtcaacgcctccagagtgggccgccaccagctg
gagaccttccttcccaatgtgacagagttcagcctccgcctgccggaccgctccacccgc
tacaagttcttcctgtcagcgctcacacaggtgggggcgggggaggtgttcgccgaggag
tccccacacttcaccaatgaagacaacggtactgactctaccggcctagtggagcttaca
gaggcctccgtagattcagctttctctcctactcctcctcctctcgctcctcttcctcca
actaccatcgctccgacaaccattagtacctcaactactactaccactacttctaccact
actgctgctcctaccactacgactgaggcgaccactgccactgcacgtcctgagccggtc
cccaccaggcgccctgatcacaatgtgttggtggtccctgggctggagatctgcaatctg
acggtggagcctaacagtaactacgctaacgtcagctggagacacaacttcccggtcggc
agcagcgagtttgtgctagagttcacactggacagcgacaagtcggtgaacgttgtcccc
gtgaaacagccccccattacggtggccgatctgatcgcaggcgccatgtaccatctgagg
gtttactcccatgagctcaacagcatcagcagcaaatctatcacctttaagaccaaagca
gcctacatagaccaggtggacattgccactcaaggctggttcatcggcctgatgtgtgcc
atcgccctcatcatcctcatcctgctcatcgtctgcttcatcaagaggagtcgcggaggc
aaatacccaggtggtggttgcgtgactggttttgcaaaatgtctagtccgtgacaaaaaa
gatatggcgttggacgcagtggatcacaaagaccaggatggatcttttgattaccacagc
gacgaggacaacaagcctctgcagggcagccagacgtctctggacggcaacgtgaaggag
agcgacgacagcctagtggactacggagagggcggcgacggccagttcaacgaggacggc
tctttcattggccagtacacggtgaagaaggacaaggacgaaacggagggcaacgagagc
tctgaggccacctcgcccgtcaacgccatctactcgctggcgtag
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