Pseudochaenichthys georgianus (South Georgia icefish): 117446280
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Entry
117446280 CDS
T09629
Symbol
sorcs3a
Name
(RefSeq) VPS10 domain-containing receptor SorCS3 isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117446280 (sorcs3a)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Others
Others
117446280 (sorcs3a)
Endosome - Lysosome transport
117446280 (sorcs3a)
Endosome - Golgi transport
117446280 (sorcs3a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
117446280
NCBI-ProteinID:
XP_033938315
LinkDB
All DBs
Position
1:complement(8492787..8842777)
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AA seq
1228 aa
AA seq
DB search
MGTGAGFFPGLHFSLGIWVMIATHTLQNAQARITCASCTVPVQLHREELQLGMRTDPTEE
PDTLKNIRVEFKELDQNTGVDDEQETGVSVEVVPPQDVDGVSTTEPGSNEESHSGSDKAG
EPQKGEDVALRRAKRSGPEFAEFSESGRAGVDAGAPENRGSLFDGHKQVNSDFRWNRQEG
RGNNRQDEPKIISSTFSLTGDSAHNHAVVYWSGQNSSVILILTKLYDFHIGSVTESTLWR
STDYGSTYDRMNDKVGTKTVLSYLYVCPTNKRKIMVLTDPEFESSMLISSDEGASFQKYR
LTFYILSLLFHHTEEDWALAYSHDQKLYSSVDFGRKWQLIHERVTPSRFYWSVSGLDKEP
DLVHMEAHTPDGNVQYVTCRAQTCTEANRNYPFPGYIDISSLVVQDDYIFIQVPTSGRAT
YYVSYKRDLFIQIKLPKYSLPKDLHIVSSDEKQVFAAVQEWNQNDTYNLYLSDTRGIYFT
LALENVKTTRGIGGNQMLDLYEVAGIKGMLIANKRQDNQVKTFMTYNKGRDWRLLQAPAT
DLDGNDIHCILPFCSLNLQLQTSENPYLSGTISTKSSAPGVIVATGNIGTELSYNNVGMF
ISSDAGNSWRQIFEEEHNVWFLDKGGALVAVKQPSVPTKHLWVSFDEGRQWTQHSFSAVP
LFVDGVLVEAGAENQIMTFFGHFSHRSEWQLIKIDYKSIFSRQCTEEDYQTWHLHNEGEP
CVMGQKQIYMKRRPGNYCMLGKDYSRILSAESCICRAHDFECDYGYERRGDGNCRHAFWF
NPSTVSRSCSQGQNYFNSTGYRKVVLNNCTKGVKEIYTARKQQCPNRPPKGLLVTSRDGK
LTANLGSNVTFLVHLDEGDSIRTNIQLDFGDGTAVSYSNLSWTEEGIKHVYKSAGIFRVT
ALAENTLGYDTTTLYLHVICPVEHIHLLTPFVVIKNKEVNITAVVLPSHSRTVTYFWWFG
NNTEPVITLDGSISHTFPNDGMHTITVQVAAANTILQDTKTIAVKEFFKSLLLSFSPNLD
EFNPDIPEWRQDVGRVIKKALLQVSDFPEEQLLVAVFPGVPTAAELFLLPHKNQSEGKKK
SEEVLEQVSDVIVTALNQNLVEFELKPGVRVIVYNTQLTLAPLVDSSPRHSSSAMLMLLS
VVFLGLAVFLVYKFKRKIPWINIYAEVNQEKEQEMIGSVGQGDSTPKITLSEFSASKELM
EKELDARIKRGVGNACESTREIPNCTSV
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggggactggggctggcttcttcccaggcttgcacttctctctgggtatctgggtgatg
atagccacgcataccctccaaaatgcccaggcgaggataacttgcgcatcttgcacggtg
ccagtgcaacttcaccgggaggaattacagctggggatgcgcactgacccgaccgaggag
ccggacaccctaaaaaacatccgagtagagtttaaggaactcgaccaaaatactggagtg
gacgacgagcaggagacaggcgtttctgtcgaggttgtcccccctcaagatgtggatgga
gttagtacaacagaaccagggtccaatgaagaaagtcacagcggcagtgataaggcaggg
gagccccagaagggcgaggatgtcgcgctccggagagcgaagagaagcggtcctgagttt
gccgagttcagtgagagcgggcgggccggcgtggacgccggagctccggagaaccggggc
tcgttgtttgacggacacaagcaagtgaactccgatttcagatggaacaggcaggaaggg
agagggaataaccggcaggatgagcccaagatcatcagcagcactttctctctgaccggg
gactctgcgcacaaccacgccgtggtgtactggtcagggcaaaacagcagcgtgatcctg
attctcaccaagctgtacgactttcatattggcagcgtcactgagagcactctttggaga
tctactgactacggctcaacatacgacagaatgaacgacaaagtgggaaccaaaactgtc
ctgagttacctgtacgtctgtccaactaacaagagaaagattatggtgttgacagatcca
gagtttgaaagcagcatgctcatcagctctgatgagggagccagtttccagaagtaccgc
ctcacattctacatcctgagccttttattccaccacacagaagaagactgggccttagcc
tacagccacgaccaaaagttgtacagctcggtggactttggaagaaagtggcagctcatt
cacgaacgtgtcacgccgagccgattctactggtctgtttccggcctcgacaaagagcca
gatctggtccacatggaggctcatacgccggatggaaatgtgcagtatgtcacgtgcaga
gctcagacgtgcacagaagctaacaggaactacccgttccctggatacatcgacatcagc
tcgctggtggttcaggatgactacatattcatacaggttcctacatcaggacgagccaca
tattatgtgtcctacaagagagacctttttatacaaatcaaactccccaaatactccctg
cctaaggatttacacattgtcagcagtgatgagaagcaggtatttgcggccgtgcaggag
tggaaccagaacgacacctataacctctacttgtccgacaccagagggatctacttcacc
ttggccttggaaaatgtcaagaccactaggggcatcggtgggaaccagatgctggatctg
tacgaggttgcagggattaaagggatgctgattgctaacaagaggcaagacaaccaggtg
aagaccttcatgacctacaacaagggccgggactggaggctcctgcaggctcctgccact
gacctggatggaaacgacattcactgcatactgcctttctgttcactcaatctacagctg
caaacgtcagagaacccttacctgtcaggaacaatctccaccaagagttctgcaccgggg
gttattgtcgccacagggaatattggaacagagctgtcttacaacaacgtgggcatgttc
atatcgtctgatgctggcaatagctggagacagatttttgaagaggagcacaacgtgtgg
tttctggacaaaggaggggccctcgttgcggtcaagcagccatctgtgccgaccaaacac
ttgtgggtcagctttgatgaggggaggcagtggacccaacacagcttctccgcagtgcct
ctgttcgtggacggagtcttggtggaggctggggccgaaaaccaaataatgacctttttt
ggacacttcagccaccgttctgaatggcagctcatcaagatagactacaagtccatcttc
agcaggcaatgtacagaggaagactatcaaacctggcacctgcacaatgagggcgagcca
tgcgtgatgggacagaaacagatttacatgaagcgcaggcctgggaactactgcatgctg
ggaaaggactactcaagaatcctctcagcagagtcctgtatttgtcgcgctcatgatttt
gaatgtgattatggatatgagcgccgtggagacgggaactgccggcatgccttctggttc
aacccctccaccgtgtccaggagctgcagccagggtcagaactacttcaacagcaccggg
taccgtaaagtggtgttgaacaactgcaccaaaggagttaaagagatatacacggccagg
aagcagcagtgccccaacagacctcccaaaggactcttggtaaccagcagagacggaaaa
ctcaccgccaacctgggaagcaacgtcaccttcctggtccacctggatgagggtgactct
attcgcaccaacatccagctggatttcggcgatggcacagcagtgtcatactccaacctg
agctggactgaggaggggatcaaacacgtctacaagtcagcgggaatattccgtgtcaca
gctctggcagagaacacgctgggttacgacaccacaaccctctacctgcatgtcatatgt
ccagtggagcacatccatcttctcactccctttgtggtcataaagaacaaggaggtgaac
atcacagcagtggtcctgcccagccactcacgcactgttacttacttctggtggtttggc
aacaatactgagcctgtgataacattggacgggagtatctcacacaccttcccgaacgac
gggatgcacaccatcacagtccaggtggctgcagccaacaccatcctgcaggataccaag
accatagcagtgaaagaattcttcaaatctctacttttatcattctcccctaatctggac
gagttcaacccagacatacccgagtggagacaggacgtggggagagtaattaagaaggct
ttgctccaagtgtcggacttcccagaggagcagctcctggtagccgtgttcccaggagtc
ccaacagctgccgagctcttcctgttaccccacaagaaccaatcagagggcaagaaaaag
agtgaggaggtgctagagcaggtatccgatgtaattgtaaccgcgctgaaccagaacttg
gtggagttcgagctgaagcctggtgtaagggtgattgtgtacaacacacagttaacactt
gcacccttggtggactccagccccagacacagcagctcggccatgctgatgctcctatca
gtggtgttcctgggtctagcagtgttcctcgtctacaaattcaagagaaaaataccttgg
atcaacatatacgctgaggtgaaccaggagaaggagcaggagatgattggctcggtcggc
cagggcgacagcacgcctaaaatcactctgagtgagttctccgcatccaaagaactcatg
gagaaagaactggatgccaggatcaaaagaggagttggaaacgcctgcgagagcacaagg
gagattcccaactgtactagcgtgtaa
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