KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117446322
Entry
117446322         CDS       T09629                                 
Symbol
wdr82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117446322 (wdr82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgeo03019]
    117446322 (wdr82)
   03036 Chromosome and associated proteins [BR:pgeo03036]
    117446322 (wdr82)
Messenger RNA biogenesis [BR:pgeo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     117446322 (wdr82)
Chromosome and associated proteins [BR:pgeo03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     117446322 (wdr82)
    COMPASS/SET1 complex (yeast)
     117446322 (wdr82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD_LRWD1 Beta-prop_DCAF4 VPS8_N MinC_C Nucleoporin_N
Other DBs
NCBI-GeneID: 117446322
NCBI-ProteinID: XP_033938371
LinkDB
Position
5:16790297..16794251
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTSLSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILLSTNGGALRVLDAFKGAIIHSFGGYNNNKC
VALEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaatgtgctgcggagcttcagggtggctaaggtgttccgagaaaac
tcagacaaaattaattgtttcgacttcagttcaaacggagaaacgattatttctagcagc
gacgacgattccctagtcttgtacgactgccaagagggaaaacccaagaggaccctctac
agcaaaaaatatggagtggatttgatcagatacacacatgctgcaaacactgtggtctac
agttccaacaaaatcgatgatacaatccggtacctgtcccttcatgacaacaaatacatc
cgctactttcctgggcataacaaaagagtgacctcgctctccatgtctcctgtggacgac
acatttatttctggttcgttagataaaacaatcagactgtgggatttgcggtcacctaac
tgccagggcctgatgcacctccaggggaagccagtgtgctcgtttgatccagagggtctt
atttttgctgccggaataaattcagagatggttaaactttatgatctgcggtcgtttgac
aagggtccttttgcaaccttcaagcttcagtatgaccgaacgtgcgagtggacgggactc
aaatttagcaatgacgggaaactcattcttctttctacaaatggtggagctcttcgtgtc
ttagatgcttttaagggtgctattatacattcgtttgggggctacaacaacaataaatgt
gtagcgctggaggcatcgttcacgccggattctcagtttgtaatgattggctctgaggac
ggaaagatccacgtgtggaatgcagagagcggcatgaaggtggctttattagacgggaag
cacacgggacccatcacctgcctgcagttcaacccaaagttcatgacgtttgcaagtgcc
tgctccaacatggcgttctggctcccgaccatcgatgactga

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