Pseudochaenichthys georgianus (South Georgia icefish): 117446479
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Entry
117446479 CDS
T09629
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14962
COMPASS component SWD2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117446479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117446479
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446479
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117446479
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
117446479
COMPASS/SET1 complex (yeast)
117446479
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cofilin_ADF
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_NOL10_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
DSE1_N
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
CFAP251_N
Beta-prop_HPS5
PAC11
PROPPIN
Motif
Other DBs
NCBI-GeneID:
117446479
NCBI-ProteinID:
XP_033938559
LinkDB
All DBs
Position
5:19806191..19817161
Genome browser
AA seq
611 aa
AA seq
DB search
MELHGRLAADMKITDSVFRSFRVARTFRQNSQKVNCVDFSPDGEHAISSSDDDCIVLYDI
REGKPKGTLYSKKYGVDLIRYTHGDTQTVVYSSNKLDDTIRYLSLTDNQYIRYFPGHTAR
VIALSMSPVDDTFISGSLDKTIRIWDLRAPNCQGLTNPLGKPVCSFDPDGLIFAAGVESQ
AIKLYDLRAFDKGPFASFETKFNRACDLTGVKFSNDGKQILISTNGGIIRVLNAFNGSVL
HTFSGYNNSKGISLEACFTPDSQFVMIGSEDGRVHVWSTESGMKVAVLDGKHSGPINTLQ
FNPRYMTFASACTNMLVLDSYREPAYSWDKDYDQFLLPLLTPQEPCYILYRLDSQNAQGH
EWIFIAWSPDQSPVRQKMVYAATRATLKKEFGGGHIKDEIFGTVEDDLCFQGYLRHMSSC
CSPAPLTAAEQELQRIRVTEVKIKQEEAKRALQQLKQRRINYIQLRLDVEKETIELVHTK
PTETHELPYRIPSDSPRYHFFIFKHSHQGQRQEALVFIYSMPGYTCSIKERMLYSSCKNR
LLDEVEKDYQLEVTKKMEIDNGDGLTEDYLYEEVHPMEHALKQAFAKPRGPGGKRGNKRL
IKGAGENGEES
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagctacacggtcgcttagctgcagacatgaagatcacagacagcgtttttcggagt
ttcagggttgccagaacatttcgacaaaattcccaaaaagtcaactgtgtggacttcagc
ccagatggtgaacatgcaatatcaagcagcgacgacgactgcattgtgttgtatgacatc
cgagagggaaaacctaaagggaccctctacagcaagaagtatggagtagatctgatccgc
tacacacatggagatacacagacagtggtctacagctccaacaaactagacgataccatc
cgatacctttcacttactgacaaccagtacatcaggtatttccctggtcacactgcaagg
gttatagctctctccatgtcaccagtggacgatacatttatctcgggatctttggacaaa
acgatccggatctgggatctgcgcgctccaaactgtcaaggtttgactaatccactgggg
aaacctgtttgttccttcgaccctgatgggctgatatttgctgcaggagtggaatcacag
gccatcaaactatacgacctgcgtgcttttgacaagggtccctttgcctcttttgagaca
aagttcaatcgcgcctgtgacttgactggagtcaaattcagtaacgatgggaaacaaatt
ctcatctcaacaaacggagggataattcgtgtcctaaatgctttcaatggatctgtgctg
catactttttctggctacaacaacagtaaaggcatctccctggaggcttgcttcactcct
gactctcagtttgtcatgatcggctcagaggatgggagagtccatgtctggagcactgag
agtgggatgaaggtggctgtgctggacgggaaacactcaggaccgatcaacacgctacag
ttcaaccccagatacatgacgtttgccagcgcctgcactaacatgttggtgttagattca
tacagagagccagcgtacagctgggacaaggattacgaccagttcctgctccctctgctc
acgcctcaggaaccctgctacatcctctaccgtctggactcccagaatgcacaagggcac
gagtggatcttcatcgcctggtcacctgaccaatcaccagtgaggcagaagatggtgtat
gcagcgactcgcgccaccctgaagaaagagtttggaggaggtcacattaaagatgaaata
tttggcaccgtggaggacgatctgtgtttccagggatacctgcgccacatgtcctcctgc
tgctcccccgccccgctcacagcagccgagcaggagttacaacgaatcagagtcacagag
gtcaagatcaaacaagaagaggccaagcgagctctgcagcaactcaagcagagacgcatc
aactacatacagctgaggctggatgtagagaaagagaccattgagttggttcacaccaaa
cctacagagacccacgagcttccctacaggattccctcagattctcccagataccacttc
ttcatcttcaaacattcccaccagggccagcggcaggaggcgctggtgttcatatattcg
atgcctggttacacctgtagcatcaaggagcggatgttgtattcaagctgtaagaaccga
ctactggacgaggtggagaaagactatcagctggaggtcaccaaaaagatggagatagac
aatggcgatggcctgacagaagactacctgtacgaggaggtgcacccgatggagcacgcc
ttgaagcaggcctttgccaagccccgcggaccgggggggaagaggggcaacaaacgcctc
atcaagggcgctggggaaaacggggaagaaagttag
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