Pseudochaenichthys georgianus (South Georgia icefish): 117446603
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Entry
117446603 CDS
T09629
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446603 (chd5)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117446603 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
PHD-1st_NSD
ResIII
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
117446603
NCBI-ProteinID:
XP_033938779
LinkDB
All DBs
Position
5:complement(32623533..32685755)
Genome browser
AA seq
1999 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDDDEEGERNTVPLTPLDSFFSDSDSLKQQKKQKPKKMK
EGKMPKVKKRKKEGGIQPRVDSDLEETSEVEEERERPEIGSESESSAYGPTKKKKKKPKE
KKEKKPRKKKRDEEDEDDDDDDGNMKEPKSSSQLMEEWGLEDVQYGFTEEDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPSAQPGPIKKAKTKEGKGPGVRKRSKSVKDLKKKAKPKKTKSKSGQSVKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKSRRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEDEEEE
PVGEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAEPPEGPDGTPGDPLINPPLKGRAEREFYVKWAGLSYWHCSWV
SELQLELYHAVMYRNYQRKNDMDEPPPFDYGSGEEELNNEKRRSKDPQYAAMEGRFYRYG
IKPEWLVMHRIVNHSFDKDGDVHYLIRWRDLPYDQCTWEGDDFDVPEYEIHKASFWDHRE
QILGEDQRPLVVRKGKKLKEDHQKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVLTYTGDKDSRAIIRDNEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPIRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKSGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVSSTGSYDGNQLVKSSGKVTLLQKMLRKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGVTGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEIEAARAMGDNKDCEEGNVIHYDDDAISNLLDRSRDTTEDTEV
QNTNEYLSSFKVAQYVVKEEEGEEEVEREIIKQEENVDPDFWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDTTQEDQDNQSEYSVGSEDEDEDFEERPEGGRRHSRRQMKNEKDKP
LPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEREFRAY
VSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKLSSP
DLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPIPPEKPESLLSAAEDKDTTEQYGK
KVSEQESSSAEAASAPEKAADSEESKASSEEKTGDERDRTESPSAKTEPSANSKESASKQ
PELSASQTSPRSTVEPSKEPEKSSEKGDTDFPSTKTEDKESKPAVADDMKSEDALEGRLN
GDKDMLDEMDDSRKEDKNGYKVKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWHRR
HDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEIHKGNYLEMKNKFLARRFKLLEQA
LVIEEQLRRAAYLNMTQDPSHSAMALNARFAEVECLAESHQHLSKESMAGNKPANAVLHK
VLNQLEELLSDMKADVTRLPNMLSRIPPVSGRLQMSERSILSRLTSRGSEPPPQQPFSQG
GFGCSQMYSSSFGGGFRGPGAQAMVNFSQMPLGPYVSVSSNGPPPPTSHLDKKSLDSLRD
VATPDLKSGKPSDVICIED
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgatgatgaggaaggtgagcgcaacaccgttccactcacacccctcgacagc
ttcttctccgacagcgactcccttaaacaacaaaagaagcagaagcccaaaaagatgaaa
gagggcaaaatgcccaaagtaaagaagaggaaaaaggagggtgggatccagcccagagtg
gacagcgacctggaggagacctcggaggtggaggaggagcgggaacgtccagaaatcggc
tctgagagcgagagcagcgcgtacgggccgaccaagaagaagaagaagaagcccaaggag
aagaaagagaagaagcccaggaagaagaagagggatgaggaagatgaggacgatgacgat
gatgatgggaacatgaaagaacccaaatcctccagccagctgatggaggagtggggtctg
gaagacgtgcagtatggcttcaccgaggaagactataaaaccatcaccaactacaaggcc
ttcagccagttcctcaggcctctcattgccaagaagaacccgaagattcccatgtcgaag
atgatgacagtgttaggggccaagtggcgcgagttcagcgccaacaacccgttcaaagga
gcatctgccaccgctgtggctgccgctgtggctgccgccgtggaaacggttaccgtggca
cagccgacgtctgtcagcagcagccagccgagcgctcagccggggcccatcaaaaaagcc
aaaaccaaagagggaaagggacccggagtgaggaagaggagcaagtctgtgaaggacctg
aagaagaaagccaagcccaaaaagaccaaatcaaagtcgggccaaagtgtgaagaagaag
aaagcgtcctcgagtgaggaggacttcctggaggagtccgactttgatgacatcagcatc
cacagtgcctcggtgctttctgatacctcgggggccgccaccaagaagaaatcccgacgt
gggcggaaaaaaaggaaaaaggaagatggggacggctatgagacggaccatcaggactac
tgtgaggtttgccagcaggggggggagatcatcctgtgtgacacctgcccccgagcctac
cacctggtgtgtctggacccggagctggagaaggcccccgagggcaagtggagctgtcca
cactgtgagaaagaggggatccagtgggaggccaaagacgaggaggacgaagaggaggag
cccgtaggggaggaagaggacgaccacctggagttctgcagagtgtgtaaagatggggga
gagctgctgtgctgtgacacctgcccatcgtcctaccacatccactgcctcaatcccccc
ctgcccgagatacccaacggggagtggctgtgtccacgctgcatgtgccctcccctgaaa
ggtaaggtccagaagattctgcactggacgtggggagagcccccgctgccagcagagccg
cctgagggccctgacggcacgccaggtgatccgctgatcaaccctccgctcaagggccgc
gcagagcgggagttctacgtgaagtgggccggcctctcatactggcactgctcctgggtc
agcgagctgcagttggagctgtatcacgcggtcatgtatcggaactaccagcgtaagaac
gacatggacgaacctccgccatttgactacggctcgggtgaggaggagctcaacaacgag
aagaggaggagcaaagacccccaatacgctgcgatggaggggcgcttctaccgctacggc
attaaaccagagtggctggtgatgcaccggatagtaaaccacagtttcgataaggacgga
gatgtgcattacctgatcaggtggagagacctgccctacgaccagtgcacctgggagggg
gatgactttgacgtcccggaatatgaaattcacaaagcttctttctgggaccacagggag
caaatactcggtgaggaccaacgccccctggtggtgagaaaaggaaagaaactcaaagag
gaccatcaaaagagggaggtccctcctgacgctcccatcatagatccaaccatcaagttt
gagcaccagccgtggtacattaacgccacggggggcacgctgcacccctaccagctggag
ggtctgaactggctgcggttctcctgggctcagggcaccgacaccatcctggctgatgag
atggggctggggaagacggtgcagaccatagtgttcctctactcactctataaggagggt
cactcgaaggggcccttcctggtgagtgcgcccctctccaccatcatcaactgggagagg
gagtttgagatgtgggctccggacttctacgtgttgacctacaccggagacaaagacagc
cgggcgatcatcagggacaacgagttcaccttcgaggacagcgccgtgaagtccggacgc
aaggtgttccgcatgaagaaagacactcccatcaagttccacgtgctgctgacctcttac
gagctgatcaccatcgatcaggccatcctgggctccatcacctgggcctgcctggtggtg
gacgaggcccaccgactgaagaacaaccaatcaaagtttttcagaatcctcaacgggtat
aagatctactacaagctgctgctcactgggactcctcttcagaacaacctggaggagctg
ttccacctgcttaacttcctcaccccgatacgcttcaataacctggaaggcttcctggag
gagtttgctgatatctctaaggaggaccagatcaagaagctccacgacctgctgggccct
cacatgctcagacggctgaaagcggacgtcttcaagaacatgccttcaaagacagagctg
atcgtccgggtggagctcagccccatgcagaagaaatactacaagttcattttgacacga
aatttcgaggctctgaactcgaaaagtggagggaaccaagtgtcgctgctcaacattatg
atggacctgaagaagtgctgcaaccacccctacctgttcccagtggctgctgtggaagct
cctgtgtcatccaccggctcgtatgatggcaaccaactggtgaagtcctcaggaaaagtg
acgctgcttcagaaaatgctgaggaaactcaaagacgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctgcttgaggacttcctggagttcgagggttataaa
tatgaacgtattgatggaggagttacaggaggcctgaggcaggaggccattgaccgcttc
aatgcccccggcgctcagcagttctgcttcctgctttcaactcgagctggaggtcttggc
atcaacctcgcgagtgctgacaccgtcatcatctacgactcggactggaaccctcacaat
gacatccaagctttcagcagggctcatcgtatcggccaaaacaggaaggtgatgatctat
cgctttgtgacgcgcggctcggtggaggagcggatcactcaggtggcgaagaggaagatg
atgctgacccacctggtggtgaggcccggcctgggctccaaaactggatccatgtccaaa
caggaactggacgatatcctcaagttcggcaccgaggagcttttcaaagatgaaatagaa
gcagcacgagccatgggtgacaacaaagattgtgaagagggaaatgtgattcactacgat
gatgacgccatctccaacctgttggaccgcagtcgggacaccaccgaagacacagaggtt
cagaacacgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaagaagag
gaaggagaggaggaggtggagcgggagattatcaagcaggaggagaacgtggatccggac
ttctgggagaagctcctccgtcaccactacgagcagcagcaggaggacctggcccgcaac
ctggggaaaggcaaacgcatccggaagcaggtcaactacaacgacaccacccaggaagac
caagataatcagtcggagtactccgtggggtccgaggatgaggacgaagatttcgaggag
aggcctgaaggaggacgcagacactctcgtcggcagatgaagaatgagaaggacaaacct
ctgcctcccttactggcacgggttgggggcagtattgaggtgctggggttcaacgcccgg
cagaggaaagccttcctgaacgccatcatgcgttggggcatgccccctcaggacgccttc
aactcccattggctggttcgagacctgagagggaagagcgagcgtgagttcagggcctat
gtgtctctgttcatgagacatctgtgtgagccgggggcagacggagcagagacgttcgct
gacggagtcccacgcgagggactgtctcgtcagcacgttctcaccaggatcggagtcatg
tccctcgtcaggaagaaggtgcaagagtttgagcatgtaaatgggaagctgagttctccg
gacctgattcccattggcatggagctgaagaaactgacggagagtttgtcttcagatccc
aacacgcctgttcctgccagccctgtggccacgcagccgggcacccccatcccaccagag
aagcctgagtctctcttgagtgctgctgaagacaaggacaccacagagcaatatggcaag
aaagtttcagaacaggaatcttccagtgccgaggcagcgtctgcacctgagaaggcggct
gacagcgaggagagcaaggccagctcagaggagaaaacaggagatgaaagggacagaacc
gagtcgccctctgcgaagaccgagccatctgccaactccaaggagtctgcttccaaacag
ccagagctatcagccagtcaaacctcgcctagaagcacagttgagcccagcaaggaacca
gaaaagtcctcagaaaaaggagatactgattttccttcgacaaaaactgaagacaaagaa
agtaagccagctgtggcagacgatatgaagagtgaagatgcattagagggtcgattaaat
ggagataaagacatgttggacgagatggatgacagcaggaaggaggacaaaaatggatac
aaagtcaagttcatgttcaatatcgctgatggaggttttacagagctgcacaccctctgg
cagactgaggagcgagcggcgctgtcttcaggaaagatgcatgacatctggcaccgtcgc
catgactactggctcttagccggcatcgtaacacacggctacgctcgttggcaggacatc
cagaatgacccgcgctatgctattctgaacgagcccttcaaaactgagattcataagggc
aactacctcgagatgaagaacaagttcctcgcacgccgctttaagctgttggagcaggct
ctggtgatcgaggagcagctgaggcgggcagcgtacctgaacatgacccaggaccccagc
cactccgccatggccctcaacgcccgcttcgctgaggtggagtgtctggccgagtcccac
cagcacctgtccaaagagtccatggccgggaacaagcctgccaacgccgtgctgcacaaa
gtgctgaaccagctggaggagcttctgagtgacatgaaggctgatgtaacccggctgccc
aacatgctgtcccgcatcccgccggtgtcgggccgcctccagatgtctgagcggagcatc
ctgagccgcctcaccagccggggcagcgagccccccccacagcagcctttcagccagggg
gggttcggctgctcccagatgtacagcagcagctttggggggggcttcagaggaccgggg
gctcaggccatggtcaacttcagccagatgcctctgggaccctacgtcagcgtgtcctct
aatggccctccgccccctacaagccatctggataagaagtcacttgactccttgagagac
gtggccacgcctgacctcaaatcaggcaaaccgagtgatgtcatctgcatagaggactag
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integrated database retrieval system
