Pseudochaenichthys georgianus (South Georgia icefish): 117446766
Help
Entry
117446766 CDS
T09629
Symbol
znfx1
Name
(RefSeq) NFX1-type zinc finger-containing protein 1 isoform X1
KO
K27391
NFX1-type zinc finger-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117446766 (znfx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
ZnF_RZ-type
AAA_19
AAA_30
Viral_helicase1
DEAD
ResIII
UvrD-helicase
SLFN-g3_helicase
nSTAND3
PhoH
AAA_22
AAA_16
AAA_25
Motif
Other DBs
NCBI-GeneID:
117446766
NCBI-ProteinID:
XP_033939059
LinkDB
All DBs
Position
5:25890182..25906948
Genome browser
AA seq
1983 aa
AA seq
DB search
MEGPTLITETTGLNNDADTGPNESAHGVRNRTRRGRSLNHGSGQPVREDTDDDDEGGGGG
VGMRWRGRAADSGRGRGDAGRGRGDAGRGRGDAGRGRGDAGRGRGDAGRGRGATHASRWE
NKYLGARPKVGGRGRGGDKGEGPEVVSGVIRNGELDAAEREGPSGWESEVGVRREGHSVD
GRRGERRDGARGRQEHNGGRSKSTGRVGAHHGHGLGYKTLEELSEKDPSVVAITLSSKPA
LRELLGDTAMRNDLVGLLCLVLSKAFESRAERGTLQHLAGIIKESDFFSTVLPRYLVGMS
SECNPTRRAQYPRDLKNILAILSEVINTFPASSVNSVTLLLTLIPASVCSLRTTGVDIQP
EIEERVKSMQGLIKHLQEKSREGTLRSDRDHYALLPIAGEEDQQDFRTISIYPTPEEFHQ
EERPFLRPNLTSQRYANTHLYLDTHFRLLREDFVRPLREGVQHLIRSKMEKGDKPLKTKR
FDDIRIYFDTKLVVPKCTNNGIAYIVQFDIQPLKFVRWENSKRLIFGSLVCLSCDDFESF
LLATVSDRDPKELAKGQVQIAFTAESRFKLAEMEKDQLFLMIETTAYFEAYRYVLEGLQE
QNEDKLPFQRYIVECNKDVFPPAYLQLEDVYDLSDVALPQHKKSITPFVSRNPQAWPQMT
KLGLDDSQMKAFQLALTKELTIIQGPPGTGKTHVGLKIARALLANRKLWSDRLDRAPMLV
VCYTNHALDQFLEGIHTFLPRGIVRVGGRSNSEILKQFNLRELTRSPDFRHSLPSHLRYG
YNVVYKELCQEERDIQSESMKLECSLKGVLREDFLQEFISDIHWDSLRQQPTQDGFLIWG
EKKKSSQMMEWLGLGSTVFLQRETENANGNEAADKEMELDDGDDFLYIPEEADLIQADRI
VEDNIGPRGGRDGKRKDDMAEALRALEDLMLAMNLEETEIQHEQSQAGWEMQRAQKKKLK
HKIMRELGKSSAMTAEEENAVFDIWTLSRPDRWRLYRLWMARYRVELSTRALRSEQAYQN
AVDRLADIKREENVHLLKGATVIGMTTTGAAKFRTVLQKVRPRLVIVEEAAEVLEAHTIT
TLSEACQHLILIGDHQQLRPSATVYELARNHNLEISMFERLVKMGLPYVRLDYQHRMRPE
IARLLTPHIYEELENHPSVFDYENIKGLSTNLFFVEHNYKEQEIQDGKSHQNQHEANFVV
ALCRYLILQDYEPEKITILTTYTGQLHCLRNLMPAKEFTGVKVHVVDKYQGEENDIVLLS
LVRSNLQGKVGFLNIPNRVCVALSRAKKGLYCIGNSEMLGKVQLWSNIFHTLRQRDQIGN
ALTLYCQNHQDRQVKASCADDFKQAPEGGCKKPCEFRLVCGHVCTRVCHPYDPEHKKYEC
HKKCQKTMCDLGHRCPLDCYKGCPEKCIVKVEKIIPRCQHTQMVPCHQDPETFVCQEPCN
KLLDCEHPCVSVCGNPCTSYCKQEVTLTLKCGHSQQGECFYNDRTDEPECRTPCVEQLKC
GHACKGNCGKCYQGRFHYACSQKCDRLLICSHKCMEPCTSDCPPCLKPCENCCVHSKCMK
PCGQPCAPCIEPCAWQCPHLSCSKLCHEPCDRLPCNQPCAKTLDCGHPCIGLCGDKCPSK
CRICHQDVVTEIFFGTEDEPDAYFIQLEDCRHIVEYTAMDQYMEMDDKRQANEAEQEAIK
LKECPRCRTPIRKNLRYGSHINRCLAEIEMVKVKINGCQVDIEEHKQALQNQWEGNLLQY
EMHDQVEYMAVQFKLVQPYLTAKDLWVLENKMDFQIRIAKLKKIQKENMSVLNSETLGEY
FVEFVRWLNNWRQKFSDQQAFDLQRELQRLTCLTELNARCHKADIRKLTDKINSEIQTIR
VVLERIGPFTEQDQDRVKEAMEELDSKLPPSGLGISEEERKMIVSAMKIAPGHWYKCPNG
HVYVITECGGAMETRRCPDCAATIGGENHALARGNQVASEMDGAQHPAWSEANNLLNFDQ
LDF
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaccgaccttaataacagagacaacaggactaaacaatgatgctgatactggc
ccaaacgaaagtgcacatggagtcagaaatagaacaagacgtggaagatcgctaaaccat
ggtagtggtcaacctgtaagggaggacacggatgatgatgatgaaggaggcggaggaggt
gtagggatgcgctggagaggaagagcagcagactcaggcagaggaagaggagatgcaggc
agaggaagaggagacgcaggcagaggaagaggagacgcaggcagaggaagaggagacgca
ggcagaggaagaggagacgcaggcagaggaagaggagcaacacatgcatcgagatgggag
aacaaatatttgggtgcaagaccaaaagtaggagggagggggagaggaggagacaaagga
gaagggccagaggtagtgagtggggtaataagaaatggagagctagatgccgctgaaaga
gaaggaccttcagggtgggagtcagaagttggtgtaaggagagaaggccatagtgtggat
ggtagaaggggtgagagaagagatggtgcgagaggccgacaagaacataatggagggaga
tcgaaatccacaggtagagttggggcacaccatggtcatggactgggctataaaacactg
gaagagctctccgaaaaagatccctctgtagtagcgatcaccctgtcttctaaacctgcc
ctgcgagaactcctgggtgatacagcaatgagaaatgaccttgttggactcctctgcctt
gtgctgagtaaagccttcgaatcccgagcggagagaggcactctgcagcacctggctggc
atcatcaaagagtccgatttcttctccaccgtcctgccacgctatctggtgggcatgagc
tcagagtgcaaccccacccgcagggcacaatacccacgggacctgaaaaacatcctggct
attctgtcagaggtcatcaacacctttcctgctagctcggtaaactctgtgactttgcta
ctgacgcttatcccagcatccgtctgcagcctgaggacaacaggagtagatatccagcct
gaaattgaggagagagtgaaaagtatgcagggcctcatcaagcacttacaagagaaatcg
agggaggggaccctgcgctcagacagggaccattacgccctcctacccattgcaggtgaa
gaagaccagcaagacttcaggaccatatccatctacccaactcctgaggagttccatcag
gaagaaaggccttttctcagacccaacctcacctctcagcgctacgcaaacactcacctc
tacctcgacacacatttccgcctgctgagagaggactttgtgaggccactccgtgagggc
gtccagcacttgattcggagcaaaatggagaagggtgataaaccactgaagacaaaacgc
tttgatgacatcagaatatattttgacacaaaactggtggtgcccaaatgcacaaataat
ggcattgcctacattgtccagtttgacattcagccacttaagtttgtgcgctgggagaac
tcaaagaggctgatctttggctccctggtctgcctgtcatgtgatgattttgagagcttc
ttgttagccactgtgtcagatcgggatcccaaagaactggcaaaggggcaggtccagatt
gcctttactgcagagagcaggttcaagttggcggaaatggagaaagaccagttgttcctg
atgattgagaccactgcctactttgaggcctaccgatatgttctagagggcctacaggag
cagaatgaggacaagctgccctttcagaggtacatcgtggagtgtaacaaagatgtgttc
cccccagcttacctgcaattagaggatgtttatgacctgtcggacgttgctctgcctcaa
cacaagaagagtataacgccatttgtcagccggaatccacaggcctggcctcaaatgacg
aagctggggctggatgactctcagatgaaagccttccagctggccctcacaaaggagctc
accatcatacagggacctcctggcactggaaaaacccatgttggactcaagatagctcga
gctctgttggccaataggaaactgtggagtgatcgattggacagggctccgatgctggtg
gtgtgttacactaaccatgccctggatcagttcctcgaaggcattcatacatttctgcca
agggggatagtgagagtgggaggccgcagcaacagtgagatcctgaagcaattcaatcta
agggagctgacccgctcacctgacttcagacattcgcttccgtctcacctgcgttatgga
tataatgtggtttacaaggagctgtgtcaggaggagagggatatccagagtgagagtatg
aagctggagtgttccctgaaaggtgtcctgcgtgaagacttcctccaggagttcatttca
gacattcactgggacagtctgcgccagcaacctacacaggatggtttcttgatctggggt
gagaagaagaagtccagtcagatgatggagtggttggggttgggttccactgtcttcctg
cagagggagacagagaatgcaaatggaaatgaagcagcagataaagagatggagctggat
gacggagacgatttcctttatataccagaggaagcagatctgatccaggcggaccggatt
gttgaagacaacattggtcccagaggtggaagagatggcaaacggaaagacgacatggca
gaggctttaagagcattagaggatctgatgctggctatgaacctggaggaaactgaaata
cagcatgagcagagccaggcaggatgggagatgcaacgggcccagaagaaaaagctgaag
cacaaaatcatgagagagctggggaagagctcggccatgactgcggaagaggaaaatgct
gtctttgatatttggacccttagccggccagacagatggagactctatcggttgtggatg
gctcgctacagggtagaactttccaccagagcacttcggtccgaacaggcctatcagaac
gcagtggacagattggctgatataaaacgtgaagagaacgtccatctcctcaagggagcc
acggtcattggcatgacaacaacaggagcagccaagttccgcacagttctgcagaaagtg
cgtccccgtctggtgatcgtagaggaggctgcagaggtgttggaggcccacaccatcacc
accctgagcgaagcatgccaacacctcatcctcatcggtgaccaccagcagctgcgcccc
agtgccacagtatacgaacttgcaaggaaccacaacctggagatatccatgtttgaaagg
ctggtgaaaatgggacttccttatgtcagacttgactatcagcaccgtatgaggccagaa
attgcccgtcttctgaccccacatatctacgaagagctggaaaaccatccctctgtgttt
gactacgaaaacatcaagggcctgagtaccaatctgttctttgtggagcacaactacaaa
gaacaggagatccaagatgggaaaagccatcagaaccaacatgaggctaattttgtagtc
gctctttgccgctatcttattcttcaggactacgaaccagaaaagattactatcctcaca
acttacaccggacagctgcactgcctgcgcaacctcatgcctgcaaaagagttcacaggg
gtcaaagtgcacgtcgttgacaagtaccaaggagaagagaatgacattgtcttgttgtct
ctggttcgcagcaacctgcagggcaaggttggctttttgaacattcccaatcgcgtctgt
gtagccctgtctcgtgccaagaaagggctctactgtattggcaacagtgaaatgctggga
aaagtccaactctggagcaacatcttccacacattgaggcagagggaccagattgggaat
gccttgactctgtactgtcagaatcatcaagaccgacaggtcaaagcgtcttgtgctgat
gatttcaaacaagcccctgagggaggctgcaaaaagccttgcgagttccgtttggtttgt
ggccatgtttgcacaagggtttgccatccatacgacccggagcacaagaagtacgagtgt
cataagaagtgccagaaaacgatgtgtgatctgggacacaggtgcccacttgactgctat
aaaggatgcccagagaaatgtatagtgaaggtggagaagatcataccccggtgtcaacac
acacagatggttccttgccaccaggatccggagacatttgtatgccaggagccttgcaat
aagctgctcgactgtgaacatccatgtgtttcggtctgtggaaacccatgcacaagttat
tgcaaacaggaggtcaccttaacactgaagtgcggccacagccagcaaggtgaatgcttt
tacaatgaccgcacagacgagcctgaatgtaggaccccttgtgtggagcagctaaaatgc
ggccatgcctgtaagggtaactgtggcaagtgttatcagggacggttccattacgcatgt
tctcaaaagtgtgatcggctcctgatttgctctcacaagtgcatggagccttgcacaagt
gattgccccccctgtctgaaaccatgtgagaattgctgcgtgcacagcaagtgtatgaag
ccatgtggacagccctgtgctccgtgcattgagccctgtgcctggcagtgccctcaccta
agctgcagtaagctttgccatgagccatgcgaccgtctgccatgcaaccaaccatgtgcc
aagaccctggattgcggccacccttgcatcggtctgtgtggagacaaatgtccaagcaaa
tgtcgcatctgtcatcaagatgtggtcacagagattttcttcggcactgaggatgagcct
gacgcttacttcattcagctagaagactgtagacacattgttgaatacacagccatggac
cagtacatggagatggatgacaaacggcaggcaaatgaagctgagcaggaggccataaaa
ctgaaggaatgtcccaggtgtcgaacaccgattcgcaagaatctacgctatggatctcac
atcaaccgctgtctcgctgaaatagagatggtcaaagtaaagataaatggatgtcaggtg
gacattgaagagcacaaacaggcccttcaaaatcagtgggaaggcaaccttcttcaatat
gaaatgcatgaccaagtggaatacatggctgttcaattcaaactggtacaaccttatctc
acagcaaaggatctgtgggtgctggaaaacaagatggatttccaaatcagaattgcaaag
ctgaagaagatccaaaaggaaaatatgtcggtattgaacagcgagacattaggagagtat
tttgtggagtttgtgcgctggctcaataactggcgccaaaaattctcagaccagcaggcc
tttgatttgcagagagagctacagaggctcacctgcctgactgaactcaacgcccgttgc
cacaaggcagacataagaaaactaactgacaaaataaattccgagatacaaacaataaga
gtggttttggaaaggattggtcccttcactgagcaagatcaagacagagtgaaagaagcc
atggaggagctcgacagcaaacttcctccctcaggcttggggatcagtgaggaagagaga
aagatgatcgtctctgctatgaaaatagcgcctggacactggtacaaatgtcctaatggc
catgtctatgtcataactgagtgtggaggggctatggagactcgacgctgcccggattgt
gcagccactattggtggggaaaatcacgcactggcacgtggcaaccaagtcgcctcagag
atggatggggcacagcaccctgcttggtctgaagcaaacaaccttctcaactttgatcaa
cttgacttctga
DBGET
integrated database retrieval system
