Pseudochaenichthys georgianus (South Georgia icefish): 117446898
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Entry
117446898 CDS
T09629
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117446898 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117446898 (smarcc2)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446898 (smarcc2)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117446898 (smarcc2)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117446898 (smarcc2)
PBAF complex
117446898 (smarcc2)
GBAF(ncBAF) complex
117446898 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
117446898
NCBI-ProteinID:
XP_033939282
LinkDB
All DBs
Position
5:complement(22151641..22168587)
Genome browser
AA seq
1049 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEEKASSSHVVVP
IPTSLEEEEWIRPVMKRDKQVLLHWGYFPDGYDTWIPSSEIEATVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDPSKDLDEASPVPASEEGNTPKTN
NTKKDSDSTPVKGGADLDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQQIISFPDKVKEKPADLQNFGLRTDMYSKKTGPVKSKSTASSMREWSEQ
ETLLLLEGLEMFKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEENSSSLGPLAFQPV
PFSQAGNPVMSSVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPDENSDENKSDNHPSEEKREAKENKNGATEEEEK
QPENGKKEEERGREQEGEREADKTEAEMGDGEKEKDGKEGTEEGQREAESEGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHQAGGPHANQAAP
TPPSQGPTAGQSAPSTPAPQPAPSPAPPASASAPESQPPQSAHTSPSCPPGGTPAANSNS
SSSITPLHEAAAPLSGETLHPSAPVPPPQ
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccaaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtctctgtccagcctggtggtccagctgctccagttccag
gaggaggtcttcggtcgccatgtcagcaaccctccgctcaccaagctgccaatgaagtgt
tttctggactttaagtcaggaggatccctctgccacatcctggctgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccatcgaggatggaccgaaat
gttgagatgttcatgaccatcgagaagtctttagtgcagaacaactgcctgagcagacca
gtcatctacctgagctctgacatagagcccaagctgctcggcaaactgaaagacatcatc
aaaagacatcagggctcagtgaccgaggagaaggcctccagctcccatgttgtcgttcct
attcccaccagcctggaggaagaggaatggattcgtcccgtgatgaagagagacaagcaa
gtgctgctccactggggatattttcctgacggttatgatacctggatcccatccagtgag
attgaggctacagtggaggatcctcccagcccagaaaagcccagaaaggtccatgcaaag
tggattttagacttggaccagtataacgagtggatgaacgaggaagactatgaagtgggc
gaaggctgcccgaagaggaagaggatctccgccaagaccctgacagatgaggtgaccacg
ccagacgagcgaagggacaagaaaccaggcagcgccaagaagaggaagaggtcgccgtcc
ccctcccccacccccccgcctcaggagagcaagaaaaagaataccaaaaaagggccaacg
accccgtacaccaagtctaaacggggccaaagggaggaggagcaggaagaccctagcaaa
gacctggatgaagcctcacccgttccagcatctgaagagggaaacacacctaaaacaaat
aacactaagaaagactcggattcaactccagtcaaggggggagcagatttggacgagcaa
gaggatgagtccatggaaacaacaggcaaggaggaggaggaaggctctccaagcgtgaag
ggtgaaccagtgaaaggctcggacctccacgaggacaacgtgaccgagcagactcatcac
atcatcatacccagctacgctgcctggttcgactacaacagtgttcatgccattgagcgc
agagccctgccagagttctttaatgggaagaacaaatccaaaactccggagatttacctg
gcgtacaggaacttcatgattgacacctacagactgaaccctcaggagtacctgacgtcc
accgcctgccgcaggaacctggccggagacgtctgtgccatcatgagagttcatgccttc
ctggagcagtggggcctcatcaactaccaggtggactctgagagcagacccacacccatg
ggccccccacccacctctcacttccacgtcctggcagacactccgtccagtctggttccc
ctgcagcccaaaacgtcccagaccccggccacccagcagattatctccttccctgataaa
gtgaaggagaaaccagcagatctgcagaactttgggctgaggaccgacatgtacagcaag
aagacgggccctgtgaagagcaagagtacagcgagctctatgagggagtggtcagaacaa
gaaacacttctactccttgaggggttggagatgttcaaggacgactggaacaaggtttca
gaacacgtgggcagccgtacgcaggatgagtgcatcctgcacttcctgcggctgcccatc
gaagacccttacctggaggaaaactcctcgtccctggggccgctcgccttccagccggtt
cctttcagccaggcaggaaacccggtgatgagctcggtagccttcctcgcctctgtcgta
gacccccgcgtcgcctcggctgcagccaagtctgctctggaggagttttcgcgtatgaag
gaggaggttcccgcggcgctcgtggaggctcatgtccgacgggtggaggaggcagcgagg
gtcagcgggcgacaagaccctctgtacggcctggaggggagcggcatcgcaggcaccggc
ctggaggagggggagagacctgatgaaaacagtgatgaaaacaagagtgacaaccaccca
agtgaagaaaagagggaggccaaggagaacaaaaatggagcgactgaggaagaggagaag
cagccagagaatgggaagaaggaagaagaaagagggagagaacaagagggagagagggag
gcggacaaaacagaggcggagatgggcgatggggagaaggagaaggacggaaaggagggc
acggaggaagggcagagagaggcggagagcgaaggagagaggaaggctaaagtggagcga
gacgtgggagaggggaacctggccaccgccgctgcgtctgccctcgctgctgctgctgtc
aaagccaagcacctggctgcggtggaggagaggaagatcaaatctctcgtggcgctgctg
gtggagacccaaatgaagaagctggagattaaactgcgacacttcgaagaactggaaacc
atcatggacagagagcgggaggctttggagtaccagcgtcagcagctgctggctgaccgg
cagtccttccacatggagcagctgaagtacgcggagatgagggcccgccagcagcacttc
cagcagatccagcaccagcagcaccaggcgggggggcctcatgccaaccaggcggccccc
accccaccgagccagggtcccaccgcaggtcagtcggctcccagcacaccagcgccgcag
ccggcccccagccccgcccctccagcttctgcctcggcccctgagtcccagccccctcag
agtgctcacacctcgccctcctgcccccccggcgggacccccgctgccaactccaactcc
agctccagcattactccactccatgaggccgccgcccctctttccggggaaaccctccac
ccctcggctcccgtcccgcctccacagtga
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