Pseudochaenichthys georgianus (South Georgia icefish): 117447272
Help
Entry
117447272 CDS
T09629
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117447272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117447272
03009 Ribosome biogenesis [BR:
pgeo03009
]
117447272
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117447272
Spliceosome [BR:
pgeo03041
]
Complex A
U2 snRNP components
U2 related factors
117447272
Complex B
117447272
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117447272
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
90S particles
Helicases
117447272
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
DUF5549
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
117447272
NCBI-ProteinID:
XP_033939856
EnsemblRapid:
ENSPGEG00000017906
LinkDB
All DBs
Position
1:32627212..32639001
Genome browser
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDSKPSTGPSN
ITVPMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFCDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVKGQPGPKRAVACTQPRRVAAMSVAQRVADEMDIMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRGDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEEEGDALLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEAPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLDSKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgccttgatttgggggatgactactcttccaccaagaagaggtct
gaagggagagacagggatcgtgacagagaccgtgaggaccgctccagggacagggaccga
gatagggaccgggatagagaccgggacagagactcaaagccttctactggcccgtctaac
atcacagtgcccatgccctgcttggcacccatcaagcagatggctatgcaacagcagatc
aacccattcaccaacctgccgcacactccacgcttctacgagatcctaaagaagcggtta
caacttccagtgtgggagtacaaagaaaacttctgcgatatcatcacacgtcatcagagc
tttgtccttgttggagaaactggctctggaaagaccacacagatcccacagtggtgtgtg
gacatggtgaagggccagcctggacctaagagggctgtagcctgtactcagcccaggaga
gtggctgctatgagtgtggctcaaagagtggcagatgaaatggacatcatgcttggacag
gaagtcggctactctattcgatttgaggactgcagctctgctaagactattctcaagtac
atgacagatggtatgttactgcgagaggccatgaatgacccgctgctggagcgttacggt
gtgatcattctggacgaggcccacgagcgaaccctggccacagatatcctgatgggagta
ctcaaggaggtggtgcgtcaacgaggagatctgaaggtgattgtcatgagtgccacgctt
gatgccgggaagtttcaggtgtatttcgacaactgtcctctcctcactattcccgggcgt
acacatcctgtagagattttctacactccagaaccagagcgagactacctcgaggcagcg
atccgcactgtcatccagattcatatgtgtgaggaagaagagggagacgccctgctcttt
ctcactggtcaagaggaaatcgatgaggcgtgcaaacggatcaagcgtgaggtagatgac
cttggacctgaagttggagacatcaaaatcattccactgtattccacattaccaccgcag
cagcagcaacggatctttgaggctcctcctccaagaaagcccaatggtgcaataggaaga
aaggttgtggtttcgacaaatattgctgagacctctctgacaatagacggtgtggtgttt
gtcattgatcctggatttgcaaagcaaaaggtttacaatccccgtatcagagtagagtct
ttgcttgtcacggccatcagtaaagcttcggcccagcagagggcgggtcgagccggcaga
acccgtccagggaaatgtttccgcctctacacagagaaggcctacaaaactgagatgcag
gataacacgtaccctgagattcttcgatccaacttgggatctgttgtgctgcagctgaaa
aagctgggcatcgatgaccttgtgcactttgacttcatggaccccccagctccagagacg
ctgatgagggccctcgagctgctgaattacctggcagctctcaatgatgacggcgacctg
acggagctgggctccatgatggccgagttccctttggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctttccattactgccatgctgtca
gtcccacagtgttttgtccggcccacggaggctaagaaggcggcagatgagtccaagatg
aggtttgctcacatcgacggagatcacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggccaaccagtggtgctatgataactttgtcaactaccgctcactgatg
tcagctgacaacgtgcgccagcagctgtccaggatcatggaccgcttcaacctgccgcgc
cggagcacagagttcaccagcagagattattacaccaacatccgcagggcgctctgcacc
ggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcactgtcaaagac
aaccaagtggtccaactccatccctccacagtcctggaccacaagcccgagtgggtgctc
tataatgaatttgtcctgaccaccaaaaactacattcgcacttgctcagacatcaaacca
gagtggttggtgaagattgcccctcagtactatgaaatgggtaacttcccccaatgtgaa
gctaaaagacagctggagcgaatcattgccaaactagatagcaaggagtattcccagtac
tga
DBGET
integrated database retrieval system
