Pseudochaenichthys georgianus (South Georgia icefish): 117447431
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Entry
117447431 CDS
T09629
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
KO
K14298
mRNA export factor
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117447431 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117447431 (rae1)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117447431 (rae1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117447431 (rae1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117447431 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WDR55
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_Vps41
NBCH_WD40
Beta-prop_SPT8
Exonuc_X-T_C
Motif
Other DBs
NCBI-GeneID:
117447431
NCBI-ProteinID:
XP_033940062
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All DBs
Position
5:8100801..8106577
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AA seq
369 aa
AA seq
DB search
MSLFGTTSGFGAGGTGVFGNATTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGPIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERSYCADVVY
PMAVVATADRGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACAFNSNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttgggacaacctccgggtttggagcaggagggacaggtgtctttggaaat
gcaacaacagacagccacaatcccatgaaggatgttgaagtgacttcacctccagatgac
agcatcagctgtctggctttcagtcctcccaccatgccagggaacttccttattggagga
tcctgggccaacgatgtccggtgctgggaggttcaggacaatggacagaccgtcccaaaa
gcccaacagatgcacacaggtccagttctggatgcatgctggagcgacgacgggagtaaa
gtcttcacggcttcctgtgacaaaacagccaagatgtgggatcttaacagcaatcaagca
atgcagattgcacagcatgagggcccgatcaaatcaatccactggataaaagccccgaac
tacagctgcatcatgactggcagttgggacaaaacactgaagttctgggacacccgctct
cccaatcccatgatgtctctgcagatgccggagagaagctactgtgcagatgttgtgtac
cccatggcggtggtagccacagctgacagaggcctgatagtttaccaactggagaaccaa
ccctctgagtttcgcagaatagactcgcctctcaaacatcagcaccgctgtgttgccata
ttcaaggacaagcagaacaagcccacaggctttgcactgggtagcattgagggccgagtg
gccatccactacatcaaccctccaaacccagccaaagacaacttcacctttaagtgccac
aggtcgaatggaaccaacaccaccactccacaggacatctatgctgtcaatgccatctcc
ttccatcctgtccacggcactctggcgactgtgggctcagacgggcgcttcagcttctgg
gacaaagacgcccgcaccaagctgaagacctcggagcagctggaccagcccatcactgcc
tgcgccttcaacagcaatggcaacatctttgcatacgcctccagttacgactggtcgaag
ggacatgagtactacaacccccagaaaaagaactacatcttcttgaggaacgctgccgag
gagctgaagcctcggaacaagaaatggtga
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