Pseudochaenichthys georgianus (South Georgia icefish): 117447501
Help
Entry
117447501 CDS
T09629
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117447501
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117447501
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117447501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Sf6_terminase
Motif
Other DBs
NCBI-GeneID:
117447501
NCBI-ProteinID:
XP_033940100
LinkDB
All DBs
Position
6:34275853..34397987
Genome browser
AA seq
902 aa
AA seq
DB search
MCPDLLNNFLLTHCTAQESYPRIAQTMCADCPTARAEKEPTCQVLNRGLMESQTELQAGR
GVCQRGCGLRLSGEDMSSGQHCCVEALRTVTEALEERSATLEHETRMQRLRWNRREQSLL
AQVTALQTEAQLSALQHQRRRHQYMLHIHSLAEQLTGYCQVNGKELSKSSHEETAEAFRA
ARDPVVVQVIRRTPSGRPHGLPQEIHVVDVCTQTDITFEHIMALVKLRPSTPPVPDVCPF
LLSDSCHSLHTMDKDYYEGTDYLSPVPADGERTEEFEYEEVELCRLNSQEKLGLTLCYRT
DEEDDVAIYVSEICPNSIAARDGRIREGDRILQINGQDVQDREEAMAALANDDSRNIILL
VARPELQLEEAWLDDEHSEFLEQLKMEMLEEQQREEMELAALQEEQENEQMRAEDDKPTC
STLPHHKDNVLSIKDRMESSEHNVLAHIQKRLSQCLRDNRDTHRSTGSTRLEDKDDEDDD
ESEGDRFQQLLELKCQIRNSGEYDLFYSRRSTIECSIGEQGGVQHELRMLNDELRSIELE
CQNIMQAHNLRKGQQSPSTGHSAPSTKNQSLNRSDPSRGKLIDINGRLEKSDKDSSSAYN
TAESSRSTPLAMDRSPEHSLQRMVSLTNQRNLRSGLASGPSLSPSPIPEYSAAVPGKSSS
PDHSNHSKSNQTSQAEEESSGKVKSLASQIPYFSPSHSSQQRQVNIPAHARHYQSYMQLI
QQHSAVEYAESQLSLLSVCKEPQMPNNENKMEWKVKIRSDGTRYITKRPVRDKILRERAL
KIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRQRREFMQRSRLESLKENP
QSSSEGRKEVSIIELSHKKMLKKRNKKILDNWMTIQELMTHGTKAPEGGAKVHNAFLSVT
TV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccagacttgttaaataactttctcctaactcattgtactgcccaggaaagttat
ccgcgcattgcgcaaactatgtgcgctgactgcccgactgctcgcgcggaaaaggagcca
acctgtcaagttttaaaccgaggcctgatggagtcgcaaacagagctgcaggcgggtaga
ggtgtttgtcagagaggatgcgggctgcggctctccggtgaggacatgagctccgggcag
cactgctgtgtggaggcgctgcgcaccgtcaccgaggcgctggaggaaagaagcgccact
ttggagcatgaaacccggatgcagaggctcaggtggaaccgcagggagcagagcctgctg
gcccaggtgacagctctgcagaccgaggcccagctctctgctctgcagcaccagcggaga
cggcaccagtacatgctgcacatccacagcctggcggagcagctcaccggctactgccag
gtgaacgggaaggagttgtccaaatcgagccatgaggagacggcggaggccttccgcgct
gccagggaccccgtcgtggtgcaggtcatcaggcggacccccagcggccgcccccatggc
ctccctcaggaaatccatgtggtggatgtatgcactcagaccgacatcactttcgaacac
atcatggcgttggtaaagctccggccttcgacccctcctgtgcctgacgtctgtcccttc
ctgctctctgacagctgtcattctcttcacacaatggacaaggattactatgaagggacg
gattacctctcccctgttccagctgacggagagaggacggaggagtttgagtatgaggaa
gtggaattgtgtcgactcaacagccaagagaagttggggctaactctttgctacagaaca
gatgaagaggatgatgtggccatatatgtcagtgagatctgtccaaacagcatcgccgcc
agagatggacgcatcagagagggcgaccgcattttacagattaatggccaagatgtacaa
gacagagaggaagcaatggctgccctcgccaatgacgacagtaggaacatcatactgctg
gttgccaggcctgaattgcagctggaggaggcctggctggatgatgagcacagtgagttc
ctggagcagctgaagatggaaatgttggaggagcagcagagggaggagatggaattggct
gccttacaggaggagcaggagaatgagcagatgagagcagaagatgacaagcccacctgc
tcaacactcccccatcataaggataacgtactaagtataaaggacagaatggaaagctcg
gagcacaatgtcctggcacacatccagaaacgtttgtcccagtgcctgagagacaatcgg
gacacacaccgtagcaccggctccacgcggctggaggacaaagacgatgaggacgatgat
gagtcggagggggatcgtttccagcaactcttggagctaaagtgtcagatccgtaacagc
ggtgagtacgacctgttctacagccggcgcagcaccatcgagtgcagcatcggggagcag
ggcggtgtgcagcacgagctgcggatgctcaacgacgagctgcgcagcatcgaactagag
tgtcagaacatcatgcaggcgcacaaccttcgtaagggccagcagtctccctccacagga
cactcggccccctccactaaaaaccaaagcctcaatcgtagtgacccgtccaggggtaaa
cttattgacattaacgggaggctggaaaaatcggacaaggacagctccagtgcctataac
acggcggaaagttcacgaagcacccctctggcaatggaccgctccccggagcactcacta
cagaggatggtcagcctcactaaccagaggaacctccgcagtggacttgccagtggccct
tctctcagcccgagccccatcccagaatacagtgctgcagtcccagggaaaagtagcagc
cctgaccacagcaatcattcgaagtccaaccagacttctcaggctgaggaggagagcagt
gggaaagtaaagtcacttgcttcccagattccatacttctctccatcccacagttcccag
cagaggcaggtcaacatccccgcacatgcgcgccactaccagagctacatgcagctgatc
cagcagcactcagctgttgaatacgctgagagccagctcagcctgctcagcgtctgcaaa
gagcctcagatgcccaataatgagaacaagatggagtggaaggtcaagatccgcagcgac
ggcacgcgctacatcaccaagaggcctgtgagagacaagatcctgagggagcgagccctg
aagattaaagaggagcgcagcgggggaatgaccaccgatgatgatgcaatgagtgaaatg
aagatggggaggtactggagtaaagaagaacgaaagcagcatctggtcagagcaaaagaa
cagaggcagagacgagagttcatgcagcgcagccggctggagagtttaaaggagaaccct
cagagcagcagcgaggggcgcaaggaggtcagcattattgagctcagccataagaagatg
ctgaagaaacgcaacaagaagatcctggacaactggatgaccatccaggagctgatgact
cacggtaccaaggcccctgaggggggggctaaggtgcacaacgccttcctatcagtcact
actgtataa
DBGET
integrated database retrieval system
